Ricinus communis (castor bean): 8267682
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Entry
8267682 CDS
T01087
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8267682
09124 Replication and repair
03420 Nucleotide excision repair
8267682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8267682
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8267682
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
8267682
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
8267682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
8267682
NCBI-ProteinID:
XP_048232194
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Position
1:complement(13196858..13207059)
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AA seq
599 aa
AA seq
DB search
MASKQVTKRVKYKTSLKDPGTPGRLLLTMEKLAFRPNNPNSASKLDMDFKYVTNHKNTKE
GSAKAMLNLTSNQGVSYIFEFENHDDLRICKEIVGKALSKLGDTPKPPDAPEVPSDQPST
EELLLRMNLLRENLELQKLHKQFVSDRVLTDSEFWATRKKLLNGEFSRKSKQRVGLKSVM
LADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKMSERDFWTKYCRAEY
LQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLDMEADQGDDYTHLPD
HGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQDTKAVADALARSKR
GIKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDPRDYFDSQQASALKN
SRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIATKVLSILTHNISST
KYHLGKNSRESVLDRLPNTIKEELLHHWMSIEELLRHYWSSYPITTAYLYAKVSRLKDAM
SKIDSQLQEMKESVQSDLRNQLTLLIRPMQQALEAAMQHYDADLQKRSAKSAERPNGYA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaaacaagtaaccaagcgagtcaaatacaagacctctctcaaggaccctggc
actccgggtcgtcttttactgactatggagaaattggcattcaggcctaataaccctaac
tcagcttcaaagcttgacatggactttaaatacgttacaaatcacaaaaatactaaagag
ggatcagcgaaagcaatgcttaatcttacctcaaatcagggggtaagttacatttttgag
tttgaaaatcatgatgatcttcgaatttgcaaagagattgtaggaaaagccctttcaaag
cttggagatactccgaaacctccagatgcaccagaagttccttctgatcaacctagtaca
gaagaactgcttcttcgaatgaacctgcttcgggagaatctagagttgcagaaacttcat
aagcagtttgtgagtgacagagtgttgacagactctgaattttgggcaacaaggaagaag
ttgctcaatggagagttcagcagaaagtcaaagcaacgggtgggtcttaaaagtgttatg
cttgcagattctaagccattgattgatggacagacaaacaaggttacatttaatttgaca
ccggagattgtacgtgagatctttgcagagaaaccagcagttcatcaagcatacttgagt
ttagttcctaataagatgtcagaaagggatttttggaccaaatattgtagagctgaatac
ctccaacgttcaagaaatattcacgcggcagcagcagaggctgcagaagatgaggagctt
gctctttttctaaaacctgatgatatcttggccagtgaaactaggcagaagatcagatgt
gtggatccaactctagacatggaagctgaccaaggggatgattatacacatctgccagat
catggaattgttcgtgatggcagcaaggatgtaatagagtcacagcatgaaccatacaga
aggactttgttacaagatctcaatcgccatgctgctgttgttcttgaaggaacagctata
gatgatgaacagctacaagacacaaaagctgtagcagatgcacttgctcggtcaaaacgg
ggtattaaaacaattaaccgagaggccgacgggaatgctaaccaggaaagatcgaataga
atttcgcaaatgatggaaattgaggatcttcaaggatcaaatgatcatcatttagcacca
ctttgcattaaggatccacgggattattttgattctcaacaagctagcgcacttaaaaat
tcaagagatattccttctggaacagaagctgctagatgcagcttgagctcccaagaagca
tatgcttctttgagggattcaattactcaaactaaagccatgggactgaatgatccaata
gttaaacctgaaattgctacaaaggttctttccatactgacacataatatctcaagcacc
aaatatcatcttggaaagaactctagggagagtgtcttggacaggttgccaaatacgata
aaggaggaactgctacatcactggatgtccattgaggagttgctgagacattattggtca
tcctatccaatcactactgcatatctttatgccaaggtaagtagactcaaggatgcaatg
tcaaagattgattcgcagctacaggagatgaaggaatctgtgcagtcagatcttcggaat
cagcttacactccttattcgtccaatgcaacaggctctagaggcagccatgcaacattat
gatgcagacttgcagaagagatcagcaaagagtgcagagagaccaaatggttatgcgtag
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