Ricinus communis (castor bean): 8267704
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Entry
8267704 CDS
T01087
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03020
RNA polymerase
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8267704
09124 Replication and repair
03420 Nucleotide excision repair
8267704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8267704
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8267704
Enzymes [BR:
rcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8267704
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8267704
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8267704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
TACC_C
Motif
Other DBs
NCBI-GeneID:
8267704
NCBI-ProteinID:
XP_002530639
UniProt:
B9SXC0
LinkDB
All DBs
Position
5:complement(1367083..1375580)
Genome browser
AA seq
1855 aa
AA seq
DB search
MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK
FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS
EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN
LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL
EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ
LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP
GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI
PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI
SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT
IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY
LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP
YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPGYSPSSPGYSPSSPGYSPT
SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYS
PSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVGPDY
SPSSPQYSPSAGYSPSAPGYSPSSTSQYTQTSTKDDRTDKGDRNGRDNKDEKSSR
NT seq
5568 nt
NT seq
+upstream
nt +downstream
nt
atggatatgagatttccgtactcgccggcggaggtcgctaaagtccgcatggtgcagttc
ggcatactcagccccgacgagattagacaaatgtctgtggtgcaaattgagttcagtgaa
acaacagagaggggaaagcctaagccaggtggtttaagtgatcttaggcttggtacaatt
gatagaaagatgaagtgtgagacttgcacagcaaatatggccgagtgtccaggtcatttt
ggtcacttggagttagcgaagccaatgtttcatataggctttttgaagacggtgctgagc
attatgcgatgtgtttgtttcaactgttccaagattttggctgacgaggaagaccacaag
tttaagcaagccttgaaaataaagaatcccaagaacaggcttaaaaagatccttgatgca
tgcaaaaataagactaaatgtgaaggtggggatgatatagatgtccacagtcaagacact
gatgagccagtgaagaagagtcgtggtgggtgtggtgctcagcagccaaggatgactatt
gaaggtatgaagatgattgcagagtacaaggcccaaaggaagaaaaatgatgaccaggaa
cagctgcctgaacctgttgaaagaaaacagacacttaccgcagaaagggttcttggtgtt
ttgaaaagaataagtgatgatgactgccgattgttaggatttaatccaaagtatgctcgt
ccagattggatgattttgcaagtccttccaattccaccacctcctgtgaggccctctgtg
atgatggatacatcctctaggagtgaggatgatttaactcatcaactggcaatgattatt
aggcataatgagaatctgaaaaagcaggagaagggcggagcacctgcacacatcatatcg
gagtttgcacagttgttgcagtttcatgtagccacatattttgacaatgagttgccagga
caaccaagggctacacagagatctgggagacctattaaatcgatttgcagtaggctcaag
gccaaggaaggccggattaggggtaacctgatggggaaacgtgtggatttttctgcgcgg
acagttataactccagatcccaatatcaacatagatcagttaggtgtgccttggagtatt
gcactgaatctgacctatccggaaactgtgactccatataacattgaaaggttgaaggag
cttgttgagtatggaccacatcctccacctggtaaaactggtgcaaagtatatcataaga
gatgacggtcaaaggctcgatcttcgttatttgaagaaaagcagcgatcaccatttggaa
cttggttacaaggtcgagaggcatttgaatgatggtgacttcgtgctcttcaatcgtcaa
ccaagtctccataaaatgtctattatggggcatagaatcaaaattatgccatactcaaca
ttccgtttaaacttgtctgttacgtctccatacaatgctgattttgatggtgatgaaatg
aacatgcatgttcctcaatcattcgaaactagagcagaggtgctggagctgatgatggtg
cctaagtgcattgtgtcacctcaatcaaatcggcctgtgatgggaattgtccaggataca
cttctaggatgtcgtaagatcaccaagagggataccttcatagaaaaggatgtttttatg
aacatcttgatgtggtgggaagattttgatgggaaagttcctgctcctgcaattctgaag
ccccgaccactttggacagggaaacaagtttttaatcttattatcccaaagcagataaat
cttattagaactgcagcgtggcactcagattctgaaagaggagttattactccaggagat
actctggtccgaatagaaaagggggagctactatctggaactgtttgcaagaaaactctt
gggacttctactggaagtcttattcacgtcatttgggaagaggttggtccggatgcggct
cgcaaattcttagggcatacacagtggcttgtgaattattggctgttgcaaaatggtttt
agcatcggaattggtgatacaattgctgatgcagcaactatggagaaaatcaatgaaact
atctcaaatgcaaaaaatgcagtgaaggaacttattaggaaagcccaaaacaaggagtta
gagcctaaacctggacggaccatgatggaatcatttgaaaatgaagttaaccaggtgtta
aatagagctcgtgatgatgcgggaagcagtgcacaaaaaagtttatctgagagtaacaac
ctcaaggccatggttactgcaggatcaaaagggagttttattaacatatcacagatgact
gcttgtgtggggcaacaaaatgttgagggtaagcgaataccatatgggttcattgatcga
acactgcctcacttcaccaaggatgattatggcccagaaagtcgtggttttgtggagaac
tcatatctacgtggattgactcctcaggagttcttttttcatgctatgggtggtagggaa
ggtcttattgatactgctgtgaagacttccgagactgggtacatccagagacgactagtg
aaggccatggaggatatcatggttaaatatgatggcactgttaggaattcactgggggat
gttattcagtttctatatggggaggatggtatggatgctgtctggatagaatcacagaag
ctggattcgctgaaaatgaagaaatcagaatttgatagagttttcaaatatgaacttgat
gatgaaaattggaaccctacttacatgtatcaggaccatattgatgatttgaaaaatatt
cgtgaattgcgtgatgtatttgatgctgaagttcaaaaacttgaagcagatagataccag
cttggaactgagattgcaaccacaggtgatagttcatggccattgcctgttaacctcagg
aggcttatctggaatgcacagaagaccttcaaggttgataaaagaaggccctcagacatt
catccaatggaagctgttgaagctgttgataagctacaggagagattgaaagtcgttcca
ggggatgatcctctgagtgtggaagcgcagaagaatgccacacttttctttggaatttta
cttcgcagcactcttgccagtaaaagagtgttggaggattacaggctcactcgtgaagca
tttgactgggttattggagagatcgaatcaaggttcttacagtcattagtagcgccaggg
gaaatgatcggttgtgttgctgcacagtcaatcggagagcctgcaactcaaatgactctt
aatacctttcactatgctggtgttagtgctaagaatgtgactcttggtgttcccaggctg
agggaaattattaatgtggctaaaaagattaaaacaccttctctttctatttttttgatc
cctgaatgtaacaaaaccaaggagagggctaagaatgttcagtgtgctttggagtacact
actctacggagtgttactcaagctacggaagtgtggtatgatccggatcccatgagtacc
attatagaagaggatgttgattttgtgaagtcatattatgaaatgccagatgaagagatt
tcaccagaaaaaatctctccttggttgcttcgcatagaattgaatcgtgaaatgatggtt
gataagaagcttaacatggctgacattgctgagaagatcaatcttgaatttgatgatgat
ttgacatgtatttttaatgatgataatgctgagaaactgatccttcgcattcgtatcatg
aatgatgaagccccaaaaggggagctgaatgatgagtcagctgaggatgatgttttcctg
aaaaagattgagagtaatatgctgactgaaatggctcttcggggcattccagatatcaac
aaggttttcattaaacaaagtaaagtgagcaagtttgatgagaatgaaggatttaagaca
attgaggaatggatgctggatacggagggtgtcaatctcctagctgttatgtgcaatgag
aatgttgatgcgaggaggacgaccagcaatcacttgattgaagttattgaagttcttggt
attgaggcagttcgtcgttcacttctcgatgagttgagggtggtcatatctttcgatgga
tcttatgtgaattacagacatctggctatattgtgtgataccatgacctatcgtggccat
ttgatggcaattacccgtcatggtatcaataggaatgacacggggccgttaatgagatgc
tcatttgaagagacagtggacattctacttgatgctgctgtgtatgctgaagcagattat
ttgaggggtgtcactgaaaatataatgcttggccagcttgcaccaattggcacaggagac
tgtgctttgtatctcaatgatgatatgttgaaaaatgctattgagcttcagctcccaagt
tatatggatggcctggactttggaatgactcctgctcgttctccagtctcggttactcct
taccatgatggaatgatgtctccaagttatttgctgagcccaagtcttcgtctatcaccc
acaacagatgctcaattttcgccgtatgttagcggaatgccattctctcctactttatct
cctggctatagtccatcatctccaggttacagcccatcatctcctgggtacagtcctaca
tcgcctgggtatagtcctacatcccctgggtacagtcctacttcacccggttacagtcct
acttcacccacctatagcccaagttctcctggctatagcccaaccagccctgcttattct
cctacaagtccatcttattcccctacttccccaagttatagtcccacatctcccagttac
agtcccacatctcctagttacagcccgacctctccaagttatagcccaacttccccaagt
tatagccctacatcacccgtatacagtcccacatcacctgcatatagtcccacatcacct
gcatatagtcctacctcgccatcatacagtccgacttctccttcctacagcccgacctct
ccctcgtacagcccgacttctccttcatacagccccacatcaccatcgtacagcccaact
tcgcctgcttatagccccacttccccaggttacagcccaacctccccaagctatagtccg
acctccccaagctatagtccgacctccccaagctacaatcctcagtcagcaaagtacagt
ccatcgctggcatactcacctagcagtccaaggttgtcaccttccagtccgtatagtcct
acatctcctaattacagccccacatccccttcatattcacctacatctccatcatactcc
ccttcaagcccaacatacagtcccagcagtccttacaattctggagtcggccctgattat
agcccgagttctccacaatacagtcctagtgctgggtactcaccaagtgcacccggatac
tcgccctcatcaaccagccaatacactcaaacgagtacaaaggatgacaggactgataaa
ggtgacaggaatgggagagacaataaggatgagaagagcagtcgataa
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integrated database retrieval system
