Ricinus communis (castor bean): 8268134
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Entry
8268134 CDS
T01087
Name
(RefSeq) transcription initiation factor TFIID subunit 6
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8268134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8268134
03036 Chromosome and associated proteins [BR:
rcu03036
]
8268134
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
8268134
Coactivators
SAGA/TFTC/STAGA complex
8268134
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
8268134
STAGA complex
8268134
TFTC complex
8268134
SAGA complex
8268134
SLIK complex
8268134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
Motif
Other DBs
NCBI-GeneID:
8268134
NCBI-ProteinID:
XP_048234907
LinkDB
All DBs
Position
9:complement(7094081..7099873)
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AA seq
593 aa
AA seq
DB search
MQNPFCIYAFIEFTNCYIYAQLATTPVFSPLINSCLIFCKSLPFLFSFEFKKRMSVVPKE
AIEVVAQSIGITNLSPEVALALAPDVEYRVREIMQEAIKCMRHSRRTTLTAEDVDSALSL
RKLEPVYGLASGDPLRFKRAAGYKDLYYIDDKDVEFKDVVEAPLPKAPLDTSISVHWLAI
EGVQPAIPENAPVEVLAASSDGKKSEYKEDGLPVDVKLPVKHVLSRELQLYFDKITELTM
RKSDSILFKQALSSLATDSGLHPLVPYFIYLIADEVARNLNNFSVLFALMRVARSLLQNP
HIHVEPYLHQLMPSIITCLVAKRSGNRFCDNHLELRDFTANLVASICKRFGHVYHNLQPR
VTRTLLHTFLDPLKSLPQHYGAIQGLAALGPNVVRLLILPNLEPYLLLLEPEMLLEKQKN
EMRRHEAWSVYGALMRAAGLCMHDRMKRLPGVLMPPTRAVWKSSGRLMTTVPNKRKASSD
NLIQQPPLKKLATDGPMGVIPMNSMHVDMQGATGGYHTASGASGMSISSMSRQLPNENMP
GRDISGRVSKVLPVLARAWKEDMDAGHLLASLNELFGESMSCFAPKPELSFFL
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatccattctgcatttatgcatttatcgaatttactaattgctacatatatgcc
caattagcaacaacgccagtatttagccctttgattaattcctgtttgatattttgcaaa
tctcttccttttttgttttcttttgaatttaagaaaagaatgagtgtagtgccgaaagaa
gcaatagaagtagttgcacagagcattggtatcacaaatttatctcctgaggtagccttg
gctctggctcctgatgtcgagtatagagttcgcgagatcatgcaggaagctatcaaatgt
atgcgtcattctagaagaactactttgactgcggaggatgtggatagtgctcttagttta
agaaagttggagccagtatatgggcttgcctctggagatccattgaggtttaagagagct
gctgggtataaggatttgtactacattgatgacaaggatgttgagtttaaagatgtggtt
gaagctcctctaccaaaagcacctcttgatacttccatctcagttcactggctggcaatt
gaaggtgttcaacctgcaattccagagaatgctcctgttgaagtacttgcagcatcctct
gatggtaaaaagtccgaatataaggaagatggcctcccagttgatgttaaattacctgtc
aagcatgtattgtccagggaacttcagctgtactttgacaaaatcacagagcttacaatg
agaaagtctgattctatcctcttcaaacaagctttatctagcttggcaacagactccggg
cttcatcctttagttccttattttatatacttaattgcagatgaggtggctcgaaatttg
aataatttttctgtcctgtttgctttgatgcgtgttgcccgaagccttcttcaaaatccc
cacatacatgtagaaccctatctgcaccaactgatgccatctattattacctgcctagtt
gctaaaaggtcgggaaatagattttgtgacaatcatttggagcttagagacttcacagca
aatctggttgcttcaatatgcaaaagatttgggcatgtttaccacaacctgcagccccgt
gtcacaaggactctactccatacattcttggacccattaaaatcattgcctcaacattat
ggtgcaatacaaggattagcagcattaggaccaaatgtggttcgtcttcttatactgcca
aatctggagccatatttgctacttcttgaaccagaaatgcttcttgagaagcaaaagaat
gagatgaggaggcatgaagcttggagtgtttatggggccttgatgcgtgcagctggtcta
tgcatgcatgatcggatgaaaaggttacctggtgtactaatgccaccaacacgtgctgtt
tggaagagcagtggaaggcttatgactacagtgccaaataaacgaaaagcaagctcagac
aacttgattcagcaaccaccactcaagaaactagcaacagatggtccaatgggtgtaata
ccgatgaactcaatgcatgtagacatgcaaggggcgactggtggatatcacacagctagt
ggagcttctggcatgagcatatcatcaatgtcccggcagttacctaatgaaaacatgcca
ggaagggatatcagtggaagggtgtcaaaggtgttacctgtgcttgctcgggcttggaag
gaggacatggatgcaggacatttgctggcatcactgaatgaactttttggggaaagcatg
tcctgctttgctcccaagcctgagttgtcttttttcttgtaa
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