Ricinus communis (castor bean): 8269983
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Entry
8269983 CDS
T01087
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8269983
03015 mRNA surveillance pathway
8269983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8269983
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8269983
mRNA cycle factors
P-body specific factors
8269983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
8269983
NCBI-ProteinID:
XP_048226674
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Position
2:33800..38869
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AA seq
536 aa
AA seq
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MKRKEKEEEERRRKVVIRHLPPSLSQSHLFSQFHHLLLLSFNWFCFRPPNSSHKNHRYSR
AYIEFKSPADAGQFAHLFHGHLFVDDNGAQFKAIVEYAPSQRVPKPSPVKDGREGTIYTD
PDYLEFLKLIAKPVDNLPSASVQFQIEDAAQSGLLIFSLYIHFLFHFHTLPGAAKEPPIT
TPLMEFVRQKRAAEDGNQQGSLVAVKGSKRAGSASVIKPGSSANKRGAEKKKYILKNSRK
NSNQKDKSTSIMDSRQRDEHATLSRKVSSEIRSDSGKKNILSLIGKNCEISAVSGGMLQQ
PGDSPVSTAPKRSQRLRASEMIIKSILLNNETHQSQSLNATQHRHETQNLIVEHGKKWPR
PMNKQVAINGHVPGSEPSGPIYDGDTKRNNSKFLTKGRYSVGSASAKQQKCIKDRPDPGV
WAPLCHSVVQSDNEEKLSSTLLQHSGMNSKVIDGETKSGMHYLSHTVEPTGRSSRNSSSS
VDIGSHKHFGHNVAAQRMKGDGSRIASEHKSSKRGGASGYGVQKKQVWVQKSASGS
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggaaggagaaggaggaagaagaaaggagaaggaaagtggtgataagacatttg
cccccgtcgctctctcaatctcacctcttctcccaattccatcatcttctccttctttct
tttaattggttctgcttccgccctccaaactccagtcataagaatcatagatattctcgg
gcttacatagaattcaagagccctgcagatgccggacagtttgcgcacttattccatggt
catctgtttgtcgatgacaatggtgctcagttcaaggccatcgtcgagtatgccccttcc
caacgtgttcccaagccttctcctgtaaaggatggtcgtgaagggaccatttacactgat
cctgattatttagaattcctcaaacttattgcaaaaccggtggacaatctccctagtgcc
tcagttcaattccaaatagaggatgcagcacaatctggtctgttaatattttcactatat
atacattttttgttccactttcacactctcccaggtgctgcgaaagaacctcctattact
acacctctaatggagtttgttcgtcagaaacgagctgctgaggatggaaaccagcagggt
tcgttagttgctgtcaagggtagcaaaagagctggatcagcatctgtgattaagcctggt
tcaagtgctaacaaacgaggcgctgagaagaaaaagtatatcctaaagaacagcagaaaa
aattcaaatcagaaggacaagtccactagtatcatggattctaggcaacgggatgaacat
gctactttaagtagaaaagtttcatcagaaattcgatctgattctggaaagaaaaatatc
ttgtcgctcatagggaaaaattgtgaaatctctgctgtctctggaggaatgttgcaacaa
cctggagattcacctgtttctactgctcctaaaagaagtcagagacttagggctagtgaa
atgataataaagagcatcctgttaaataatgaaacacatcaaagtcaatctttgaatgcc
acacagcataggcacgagactcaaaacttaatagtggagcatggcaagaaatggccccgg
cctatgaataagcaagtggctattaatggtcatgtgcctggtagtgagccatctggacct
atttatgatggtgatacaaaaaggaataatagcaagttcttgacgaagggcaggtatagt
gtaggctctgctagtgcaaaacaacaaaaatgtataaaggatagaccagatcctggtgtg
tgggctcctctttgtcattctgttgttcaaagtgacaatgaggagaaattgtcgtctacc
ttgctgcaacatagtgggatgaactctaaagttattgatggagaaacaaaaagtggcatg
cattatttgagccatactgtggaaccaacaggccgatcaagtagaaacagtagttcttct
gtagatatcggatcacacaaacattttggtcataatgtggcagcccagagaatgaagggc
gatggctcccggattgcatccgagcataaatcttctaaaagaggaggtgccagtggctat
ggtgtccaaaagaaacaagtgtgggttcagaaatcagcttcaggttcatag
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