Ricinus communis (castor bean): 8270388
Help
Entry
8270388 CDS
T01087
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase lambda
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03410
Base excision repair
rcu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
8270388
03450 Non-homologous end-joining
8270388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8270388
Enzymes [BR:
rcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
8270388
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
8270388
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
8270388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HHH_8
BRCT
PTCB-BRCT
BRCT_2
LIG3_BRCT
Motif
Other DBs
NCBI-GeneID:
8270388
NCBI-ProteinID:
XP_048235788
LinkDB
All DBs
Position
1:5214428..5222030
Genome browser
AA seq
567 aa
AA seq
DB search
MYGGGEESCRGRGNQVEESKLPMAPKATAKNKTPSRDPNGMFSGMVVFLVENGVQSRRLQ
IWKQKLVQMGATIETRLSKKVTHVLAMNSNALLQQLDKERLQRLKVKVLVYQWLEDSLRL
GKKVSEETYNVEVDLEEQSNKKQSLVGESTDGNASSGDEPSPRNKKVRSSSLEDNKNKPG
EDDNALIEEPNSPSASSDSSDLTLSRASIGMKTPSNSPSNDPSSAYCPPDLNRNITEIFG
KLINIYRALGDDRRSFSYYKAIPVTEKLPFKIESADQVKNLPGIGKSLQDHIQEIVTTGK
LSKLEHFETDEKVRTISLFGEVWGIGPATALKLYEKGYRTLDDLKNESSLTHAQKLGLEY
FDDIKTRIPRNEVQEMEQLLQKAGEEILPGVIHXNFCEELVCGGSYRRGKSSCGDLDVVI
THPDRKSHKGFLPKFVKRLKEMKFLREDLVFSIHSEEGTDSGVDTYFGLCTYPGRGLRHR
IDFKVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGFRLDDTGLFPATQASAGKRGSRAT
ASLRLDTEKEVFDFLGFPWLEPHERNL
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtacggtggaggggaggagtcgtgtagagggagagggaatcaggtagaagagtctaag
cttccaatggcgccaaaagcaacagctaaaaataaaactccatctcgtgatccaaacgga
atgttctctggaatggtggtcttcttggtagaaaacggagttcaatcccgccgattacag
atatggaagcagaaactggtacaaatgggagctacgattgagactcgattatcgaaaaag
gtaacacatgttcttgcgatgaattcaaacgcgcttctccagcaactggacaaagagcgg
ttacaacgactcaaagtaaaggtgcttgtttatcagtggctagaggacagtttgagatta
ggaaaaaaggtatccgaggaaacatacaatgtagaagttgatttagaagagcaaagtaat
aaaaaacagtctttagtcggtgaatcaaccgatggaaatgcttctagtggtgatgaacca
tcgcctcgtaacaaaaaggtgaggtcttcttctcttgaagataacaaaaataaaccgggt
gaagatgataatgcgttaatcgaggaaccaaactctccctccgcaagttctgatagctcc
gacctcactttgagccgtgcaagtattggtatgaagactcccagtaatagtccgagcaat
gatccatcctcagcatactgtccacctgacttaaacaggaatatcactgaaatatttgga
aaactaatcaatatatatagggcattgggtgatgatcgcaggtcatttagctattataag
gctattccagttactgaaaagttaccattcaaaattgaaagtgcagaccaggtcaaaaat
ctgcctgggattgggaagtcactgcaggatcatatacaggagattgtgactactgggaaa
ttgtccaagttggagcattttgaaacagatgaaaaggtacggacaattagtttatttggg
gaagtttggggtataggtccagccactgccctcaaattgtatgagaaaggataccgtacg
ctagatgatcttaagaatgagagttcattaacacacgctcagaaattaggattggaatat
tttgatgatattaagacaagaattccacgcaatgaggttcaagaaatggaacaacttctg
cagaaagctggggaagaaatattgcctggggtaatacactaaaacttctgcgaagagctg
gtttgcggaggatcttatagacgtggaaaatcatcttgcggagatttggatgtggtgatt
acacaccctgatcgaaaaagtcataaaggttttctgccaaaattcgtgaagcgtttgaaa
gaaatgaagttcttaagagaggatttggtatttagcattcatagtgaggagggcactgat
tcaggtgttgacacatattttggtctttgtacatatcctggaagaggactgcgccaccgc
atagattttaaggtatatccaagggatatatatgcatttggtttgatagcgtggactggg
aatgatgtactgaacagaaggttgagactgttagcagaatccaaaggattccggcttgat
gacactggattgtttccagctactcaggcttcagctggcaaacggggctcaagggctacc
gcgagcctgcggcttgacaccgaaaaagaggtgtttgatttcctgggcttcccttggctt
gaacctcatgaaaggaacctatga
DBGET
integrated database retrieval system
