Entry |
|
Name |
(RefSeq) small RNA degrading nuclease 5
|
KO |
K14570 | RNA exonuclease [EC:3.1.-.-] |
|
Organism |
rcu Ricinus communis (castor bean)
|
Pathway |
rcu03008 | Ribosome biogenesis in eukaryotes |
|
Brite |
KEGG Orthology (KO) [BR:rcu00001]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
8270416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:rcu03009]
8270416
Ribosome biogenesis [BR:rcu03009]
Eukaryotic type
Pre-60S particles
RNases
8270416
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
2:complement(7931400..7938134)
|
AA seq |
572 aa
MPSPCPSPKHEIQAVSSSKEDDSTDNCNNITNNYFDIYGPQAKAEIVFKMPEANQTLNLE
DVQGLVTWVLAEGFMPSWVFIKNKPLIPKVAMLFIPGLDASLYLSHSKLLASFKEYCSNP
RALLALSCVSDVMQTVDALLTCKMKRKRDRADSFSRKSMQTSEQGDLSSIELMKDLPFPP
TYYTLTTKQLEENDYPISQPGFVSTLPAPSGSSAYDMLALDCEMCITKEGFELTRVTVVD
VKGQVVLDKLVKPSNPIIDYNTRFSGITCEMLNGVPTSLKDVQEDFLKLVHKETLLIGHS
LENDLSALKISHGLVIDTAVLYKHPRGGSYKTALRVLAKKFLSREIQQSGDGHDSIEDAR
AAMELALLKIKNGPDFGSPPSFVRRKLLTILSESGKASSVIDDVSIVKRYASESSHAFPV
SSDDDALSKALKEVKNDRVHFVWTQLSELNSYFKKQADDEGKVNAKLAEMISLLTCQKKS
ANTKGVRCSMTSELKEILIRMDARVRCLYSALPTNTMLIICTGHGDTAIVRRLRKLLTEK
QETRICREKIVKVLEELQAQAEVALCFVGVKN |
NT seq |
1719 nt +upstreamnt +downstreamnt
atgccatctccatgtccatctccaaagcatgagatccaagctgtatcttcttcaaaggaa
gatgattcaactgataattgtaacaacatcaccaacaattacttcgatatctatggacca
caagcaaaagctgaaattgtttttaagatgccagaagctaatcaaactttgaatttggaa
gacgttcaagggcttgtaacctgggtgcttgctgaagggttcatgccgtcatgggtattt
attaagaacaagcctctcattccaaaagtggctatgcttttcatccctggcctggatgca
tcattatatttatcacactctaagttactagctagttttaaagaatactgcagcaatcca
agggcccttttagcactgagctgtgtatcagatgtaatgcaaacagttgatgcacttcta
acatgcaagatgaagagaaagagagatagagctgattcattttcaaggaaatctatgcag
acatctgaacaaggggatttatcatcaattgaactcatgaaagacctacctttcccaccg
acatattatacacttactactaaacaacttgaagaaaatgattatcctattagtcaacca
ggttttgtttctacccttcctgcaccttcaggttcttctgcttatgatatgctggcactt
gattgtgaaatgtgtatcacgaaggagggctttgagttgacaagagtgacagtggtggat
gttaaaggacaggttgtactggataaattggttaaaccatcaaaccctatcattgactac
aataccaggtttagtggaattacatgtgagatgctgaatggggtacctacaagccttaaa
gatgttcaggaagatttcttaaagctggttcacaaagaaactctcctgattggccactcc
ttggaaaatgatttgtcagctctaaaaatctctcacggattggtaattgatactgctgtg
ctatacaagcatccccgaggtggatcttataaaactgctcttagagttcttgccaagaaa
tttctttctagagaaatacagcaatcaggggatggacatgacagtattgaagatgcaaga
gcagctatggaactagcattgttaaagattaaaaatggacctgattttggttctcctcca
tcatttgtacggagaaaactcctcactattttaagtgagtctggtaaagcctcctctgtt
attgatgatgtttccatagtgaagcggtatgcttctgagtcatctcatgcatttcctgtg
tcttctgatgatgatgcactctcaaaggcccttaaagaggtgaagaatgatcgtgtacac
tttgtctggacccagctgtcagagttgaattcttatttcaagaagcaagcagatgatgaa
gggaaagtaaatgctaaactggccgagatgatatctttgctaacatgtcaaaagaaatct
gcaaatacaaaaggtgtcaggtgcagtatgacatctgaactaaaggaaattcttattagg
atggatgcaagggtgcgttgtctatattctgcattgccgactaacacaatgctcataatt
tgcactggacatggagatacagcaattgttagaagactgcggaaactgctcacagaaaag
caagaaaccaggatatgccgtgagaagattgtaaaggtcttggaagaacttcaggcccaa
gctgaagtagcattgtgttttgtaggtgtgaagaactga |