Ricinus communis (castor bean): 8270536
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Entry
8270536 CDS
T01087
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8270536
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8270536
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8270536
mRNA degradation factors
5'-3' decay
Decapping complex
8270536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
8270536
NCBI-ProteinID:
XP_002520595
UniProt:
B9S3M6
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Position
10:1699283..1708203
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AA seq
739 aa
AA seq
DB search
MDKGVGLEALSDMDDLATTFAKLNRVVTGPRHPGVIGDRGSGSFSRESSSATDWAQDEEL
ASWLDQQMFDIENTQEGKRWSSQPQPLSGRFSESKPLYRTSSYPQQQPQLHRYSSEPILV
PKSNFTSFPPPGVRNQQISPDLFNNHSLVSGPQPFSSSNLSPLSNSSLHLAGIHHDLNYR
GNMSPITSSGLSFNNRPLNHWVNHAGLLQVDQSSLLQSILQQQLSQKNGLMSAQLMPPQK
QRLHSSGQPSLAHFAAMQSHLYNSHPSSAHKMMLGLSDIRDQKHKSSHKGRHNARLPKQG
SDVSSQKSDSGWLQFRSKYMIAEEIESILKMQHAATHGNDPYIDDYYHQASLAKRSDGSR
VKKPFCPSHMKEPPSRSRNSTDQQSHLHVNALGKTPLTSIRIPQPLLDVDPPPGYGDGNS
EQISERPLEQEPMLAARIAVEDGLWLLLEVDDIDRFLQFNQPQDGGAHLRRKRQTMLEGL
AASLQLVDPLGQSGNTAGMSSKDDLVFLRIVSLPKGRKLISRFVQLLFPGSELTRIVCMA
IFRHLRFLFGGIPSDSGAAETTMNLVETVSACVNSMDLHALGACLVAVVCSLEQPPFRPL
GSPSGDGASVILKSLLERASKLLNDPQTAASRAVPNFALWQASFDEFFDLLTKYCLIKYE
TILQSVYAKDSSCPEGIELEVRAATKREMPVELLRACLPHTNERQMELLRHFGQQRSPIT
GFNAHSGSNNHMNSESVRS
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggacaagggtgtaggcttagaagctttatcagatatggatgatctggcaaccacattt
gcaaagttgaacagagttgttactggaccaagacatccaggtgttattggtgatagagga
tctggatctttttcaagagaaagttcatctgccactgattgggcacaagatgaagaactc
gctagttggttagatcagcagatgtttgatattgaaaatactcaggaaggcaagagatgg
tcatcacaaccccagcctttgtcaggccggttttcagaatcaaaacctttgtacagaact
tcctcgtatccccagcagcaaccacagctgcatcgctattcaagtgaaccaattcttgta
cctaaatcaaatttcacttcattccctcctcctggtgtcagaaatcaacagatctcacca
gatctctttaataaccattctcttgttagtggaccacagccattttcttcttcaaatctt
tctcctttgtccaactctagtcttcatttggctggcatacatcatgatttaaattaccgt
ggaaatatgtccccaataacctcttctggcctttcttttaataacaggccactaaatcat
tgggttaaccatgctggcctattacaagtagatcagtctagcctcctgcagagtatattg
cagcaacaattatcccagaaaaatggcctaatgtctgcacagttgatgccaccgcaaaaa
cagagactgcatagttcaggccaaccatctttggctcattttgcagcgatgcagtctcat
ctttataattcccatccttcatcagcacataaaatgatgcttggtttatcagatattagg
gatcaaaaacacaaatcatcgcataagggcagacacaatgcacgtcttcctaaacagggc
tctgatgttagcagtcagaaaagtgatagtggctggttgcaattcagatccaagtatatg
atagctgaggagatagaaagtattctgaaaatgcagcatgctgccacacacggcaatgac
ccatacatagatgattattaccaccaagccagtcttgccaaaagatcagatggatcaaga
gtaaagaaacctttctgcccatcgcatatgaaggaacccccttctcgaagtcgtaacagc
acagaccagcagtctcatctccatgttaatgccctggggaagactcccctaacttccata
cgtattccgcagcctctccttgatgttgatccgccccccggttatggtgatggaaactct
gaacagatctctgaaaggcctttggaacaggaacctatgcttgcagctaggattgctgtc
gaagatggcctatggcttcttctggaggtggacgacattgatcgatttctacagttcaat
cagccccaagatggaggggctcaccttaggcgtaagcgtcagactatgcttgaaggatta
gcagcatctcttcagcttgttgatcctcttggccagagcgggaatacagctgggatgtcc
tctaaggatgaccttgtgtttctgcgaattgtttctcttcccaagggtcgaaagcttatt
tctaggttcgttcagcttcttttccctggtagcgaactcacccgaattgtctgcatggct
atattccgtcacttgaggtttttgtttggtggaattccttctgattcaggagcagctgag
acaactatgaatctcgtggagactgtttctgcatgtgttaacagcatggatcttcatgcc
ctgggtgcttgccttgttgcagttgtttgttctttggagcagccaccatttcggcctctt
ggtagtccttctggggatggggcctctgttattttgaagtctcttcttgagagggcaagt
aaactattaaatgatcctcagacagcagccagccgtgctgtgcccaattttgccctctgg
caggcatcttttgatgaattttttgatcttcttacaaagtattgcctgatcaagtatgag
acaatactccaatcagtctatgcaaaggactcctcttgcccagaaggtattgaattagag
gtgcgagcagctacaaaacgggaaatgcctgttgagcttttacgtgcatgccttcctcat
acaaatgaacgccagatggagcttttaaggcactttgggcagcaacgtagtcctattaca
gggttcaatgcacattcagggagtaataaccacatgaattctgaatcagtgaggagttga
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