KEGG   Ricinus communis (castor bean): 8271895
Entry
8271895           CDS       T01087                                 
Name
(RefSeq) protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03250  Viral life cycle - HIV-1
rcu03272  Virion - Hepatitis viruses
rcu04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    8271895
   03272 Virion - Hepatitis viruses
    8271895
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    8271895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rcu04131]
    8271895
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8271895
Membrane trafficking [BR:rcu04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    8271895
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    8271895
SSDB
Motif
Pfam: AAA Vps4_C MIT AAA_lid_3 AAA_16 AAA_5 RuvB_N AAA_14 AAA_22 TIP49 DUF815 NPHP3_N AAA_2 AAA_17 AAA_25 RNA_helicase AAA_33 IstB_IS21 AAA_24 nSTAND3 AAA_28 Parvo_NS1 Mg_chelatase AAA_7 AAA_18 PhoH ABC_tran USP8_dimer Torsin bpMoxR
Other DBs
NCBI-GeneID: 8271895
NCBI-ProteinID: XP_002523783
UniProt: B9SCR4
LinkDB
Position
8:14152918..14158042
AA seq 431 aa
MYSNFKEQAIEYVRQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT
EYLRRAEEIRAVLDEGGPGPASNGDAAVATRPKTKPKDGEDGEDPEQTKLRAGLNSAIIR
EKPNVNWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKA
VATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESQPSIIFIDEIDSLCGQRGEGN
ESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKAR
QHMFKVHLGDTPHNLTESDFESLARRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFIKTP
NDMWVPCGPKQPGAVQISMQELAAQGLAAKILPPPITKTDFDKVLARQRPTVSKSDLEVH
ERFTKEFGEEG
NT seq 1296 nt   +upstreamnt  +downstreamnt
atgtatagcaatttcaaagagcaagccatcgagtatgttcggcaagcagtacaagaggac
aacgctggtaattatgcaaaagcatttcctttatatatgaacgcacttgaatacttcaaa
actcatttgaaatatgaaaagaaccctaagattcgcgaagctataacccaaaaatttact
gagtatcttcggcgagcggaggagatccgtgcagttctggatgaaggtgggcctgggcct
gcttcgaatggagatgcggctgttgctacacggcctaagactaaacctaaagatggagaa
gatggggaggatcccgagcaaacgaaattgagagctggattaaattctgcgattattaga
gagaagcctaatgttaattggaatgatgtggcggggcttgaaagtgctaaacaggctttg
caggaagctgtgattttgcctgttaagtttcctcagttttttacagggaagagacgacca
tggagggcttttcttttgtatgggccacctggaactgggaaatcttacttagccaaggca
gttgcaactgaagcagactctacatttttcagtatttcttcatcagatctggtttcaaag
tggatgggggagagtgaaaagcttgtttcaaatcttttccaaatggcacgtgaaagtcag
ccttcaattatttttatcgatgaaatagattccttgtgtggccaacgcggagaaggtaat
gagagtgaagcttcaagacgtatcaagacagaacttcttgttcagatgcagggtgtaggg
aacaatgaccagaaagttcttgttcttgcagcaacaaacactccatatgctctagatcag
gccatcaggcgacgttttgacaagcgtatatatattcccctcccagatttgaaggctcgg
cagcatatgttcaaagtgcatcttggagacacccctcataacttgactgaaagtgatttt
gaaagcttagctcgcaggactgaaggcttttcgggttcagatatttcagtttgtgtgaag
gatgtcctctttgagccggttcgtaaaacccaggatgccatgttttttatcaagactcca
aatgatatgtgggtaccttgtggaccaaagcaaccaggcgctgtccaaatttccatgcag
gagctagcagcacaagggcttgccgccaagatccttccgccccccatcacaaaaacagat
tttgataaggtccttgcacgacagaggccaactgtcagcaaatctgatctcgaggttcat
gagagattcacaaaggagtttggagaggaaggttaa

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