Ricinus communis (castor bean): 8272097
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Entry
8272097 CDS
T01087
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8272097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8272097
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
8272097
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
TCTP
Motif
Other DBs
NCBI-GeneID:
8272097
NCBI-ProteinID:
XP_048231738
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All DBs
Position
6:21447963..21455148
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AA seq
1246 aa
AA seq
DB search
MKRKRLDESKHPFEAYPFEAWYSGSWQSVEFIEIRDGVMTLHFANNHHLIEEKGPPSNFR
VKSRQATVSDCTCFLRPGIDICLLSTPENEENSEVWTDARINSIERKPHEPQCECQFFIK
HHVNQGPLGSEKVKLSEEIEVVGIDRIRVLQKLDKIPSEGQFYRWDSSEDCSTVQRTKLF
IGKFCSDLTWLVVASVMRQIAFDVRSVQNKIVYQILGCDDDCSSIKPNNHLNALSFKVEN
DILTPLVLQFAPTEADPAPDMYGVDSDEAYSVKNLRRSKRRNVQPERFLGCDLPPGADVG
WVRSMPYKPEKWKEDEMFLPLSFLFGQNASSSPEKIEGEMGVSTPQIDSLEDLPLSKLKK
RSREVKWGTVNRREHKNELAIVPIPAESDSEPFEEMNSPEKDPGNDSRETINDFSFSYYR
KKGSPAVRKKNSYELDDMVVETTRWKGRPPKTNFHSGGYRRSIPTKRGDAGEPLKYKKTT
LSAGAYNKLIKSYMKNIDSTLMSKEEPDIIDQWEQFKAKRHTVQSDKKELSPTEDDGEES
ETEMLWREMELSLASAYLLDEHEVRITTETMQKSNENCQHEFKLDEEIGILCHLCGFVST
EVKFVSAPFVEYVGWTAESRPCIDEDSRNPGEDEGLNLFGKYVAAENMSFSEENNNVWAL
IPDLRMKLHLHQKKAFEFLWKNIAGSIIPANMEKASRKIGGCVVSHTPGAGKTFLIIAFL
TSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWQIPVPVHLIHGRRSYHNFRQKTVAFRGGP
KPSQDVMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFDHRKYMAKVLRESPGLL
VLDEGHNPRSTKSRLRKVLMKVQTDLRILLSGTLFQNNFCEYFNTLCLARPKFIREVLKE
LDPKFKRKKKGEEKARHLLESRARKFFLDIIARKIDSNTDERMQGINMLRKITSRFIDVY
EGGPADGLPGLQIYTILMNSTDIQHEILVKLHKIMSTYHGYPLELELLITLASIHPWLVK
TSNCVNKFFTWDELVQIEKLKFDFKKGSKVMFVLNLVYRIVKKEKVLIFCHNIAPINIFV
ELFENVFRWQRGREIMVLTGDLELFERGRVMDKFEEPGSPSRVLLASITACAEGISLTAA
SRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLATGTLEEDKYSRTTWKEWVSSMI
FSEAFVEDPSRWQAEKIEDDVLREMVEEDRVKSFHMIMKNEKASTG
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaagcggttagatgaatctaagcatccatttgaagcatatccttttgaggcc
tggtacagcggctcatggcagagtgtggagttcatagagattcgagatggggttatgacc
ttacattttgccaataatcatcatttgattgaggagaagggtcctccctcgaattttcgt
gtaaagtcgaggcaagcaactgtatctgattgcacttgctttttgaggcctggaattgat
atttgtttgctttcaacccctgaaaatgaagaaaattcagaggtatggactgatgctaga
ataaattctatagaaaggaagcctcatgaacctcaatgcgaatgccagttttttattaaa
caccatgttaaccaaggtcctcttggatcagagaaagtaaaacttagtgaagagattgag
gtagtaggaatagaccgaattcgcgtccttcaaaagcttgacaaaattccttctgaaggt
caattctaccgttgggactcctctgaggactgctccactgtacaaagaactaaattgttt
ataggaaagttctgctctgaccttacatggctagttgtggcatctgtcatgaggcaaatt
gcatttgatgtgagatcagttcaaaacaaaattgtttatcaaattttgggctgtgatgat
gattgctcttcgataaagccaaataatcatttgaacgctttaagtttcaaggtagagaat
gatattttaacaccacttgtcctccaatttgctcctactgaggctgatcctgctcctgac
atgtatggagtggattcggacgaagcatacagtgttaagaacttgcggcgatctaagcgt
cgaaatgtccaacctgagcgtttccttggctgtgatctgcctcccggggcagatgttgga
tgggttcgatccatgccatacaaaccagagaaatggaaggaagatgaaatgttcttacca
ctttctttcctatttggtcaaaatgcaagttcttctccagagaaaatagagggagaaatg
ggagtaagtactcctcaaatagactctcttgaggacctccctctttccaaactaaagaag
agatcaagggaggttaaatggggcactgttaacagaagggaacataaaaacgaacttgct
atagttcctatccctgctgaaagtgattcagaaccttttgaagaaatgaattcccctgaa
aaggatcctggaaatgattcacgagagaccattaatgatttctcattcagttattataga
aaaaaaggttctccagcagtacgaaagaagaattcttatgaattagatgatatggtggtt
gagactactagatggaagggaagaccaccaaagacgaattttcatagtggcgggtaccgg
cgttctatacctacaaagaggggtgatgctggtgagccactgaaatataagaagacaacc
ttaagtgcaggggcatacaataaactcataaaatcttacatgaagaatattgattcaaca
ctcatgtcaaaggaggaaccggatattattgaccaatgggaacagtttaaagcgaaaagg
cacaccgtgcaatctgataaaaaagaactatcaccaactgaggatgatggtgaagaatct
gaaactgaaatgttgtggagagaaatggagttatctttggcatcagcttatcttcttgat
gaacatgaggttcgaattacgactgagactatgcaaaaatcaaatgaaaattgccagcat
gaattcaagcttgatgaagaaattgggattttatgccacttatgcggctttgtaagcact
gaagtaaaatttgtttcagcaccattcgtggaatatgtaggctggactgcagaaagtagg
ccatgcattgatgaagattcacgtaatccaggagaagatgagggcttaaatctttttggg
aagtatgttgcagctgaaaacatgtctttctcagaggaaaacaataatgtatgggcctta
atacctgatcttaggatgaaattacatttgcaccagaagaaagcttttgagttcttgtgg
aaaaatatagccgggtcaattattccagcaaatatggagaaagcatccaggaagataggt
ggttgtgttgtctctcatactcctggagctggaaaaacttttctcattattgcgttcctt
actagctacttaaagttgtttccaggaaaacggcctttagtccttgcccctaagacaaca
ctctatacgtggtacaaggaatttatcaagtggcaaattcctgtccctgttcatctaata
catggtcgcagatcctatcataacttcaggcagaagacagttgcattccgaggaggtcca
aaacccagtcaagatgttatgcatgttttggattgcttggagaaaattcagaagtggcat
gcacaaccaagtgttcttgtcatgggttatacttcattcctgacattaatgcgtgaagat
tcaaagtttgaccacagaaaatatatggctaaagtgttacgggaaagtccaggactcttg
gtactagatgaagggcacaacccaaggagtactaagtcaaggttaaggaaagtcttgatg
aaagtccaaacggatcttagaatattgctttcaggtactttgtttcaaaataatttttgt
gaatatttcaacacgctgtgtctggcaagaccaaagttcataagagaagttctaaaggag
ttagacccaaagttcaagaggaaaaagaaaggggaggaaaaagctcgccatttgctagaa
tcccgagcaaggaaattcttcttagatattattgcaagaaaaattgattcaaatacggat
gaaagaatgcagggaattaatatgctaagaaaaattactagtaggtttattgatgtgtat
gaggggggacctgctgatggccttccaggtttacaaatttacaccatattgatgaattcg
acagatatacagcatgagattttggtgaaactccacaaaattatgtctacatatcatgga
tacccactggaattggaacttttgataactcttgcatcaatacatccttggctggtcaaa
acttctaactgtgttaacaaattttttacttgggatgaattggtgcaaattgagaagctg
aagtttgatttcaagaaagggtccaaagtgatgtttgtcttgaatctcgtgtatcgtata
gtcaaaaaggagaaggttctaatcttctgccacaacattgcacccattaatatatttgtt
gagttgtttgagaatgtctttaggtggcaaaggggtagagaaattatggtcctgacaggg
gacctcgagctgtttgaacgaggaagagtgatggataagtttgaggaacctggaagtcct
tcaagagtacttcttgcatcaatcacagcttgtgctgaaggaattagtttgacggccgct
tcgcgagtaatcctattggattcagagtggaatccttccaagacaaagcaggctattgcg
agagccttccggccaggtcaacaaaaggtggtctatgtttatcagctccttgcaactggt
acactcgaagaagacaagtatagtaggacaacatggaaggagtgggtatctagtatgata
ttcagtgaggcatttgtggaggacccttctcgatggcaagcagaaaagattgaagacgat
gtgttgagagagatggtggaggaggaccgcgttaagtcattccatatgataatgaagaat
gagaaggcttcaacaggataa
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integrated database retrieval system
