KEGG   Ricinus communis (castor bean): 8272178
Entry
8272178           CDS       T01087                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    8272178
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8272178
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      8272178
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2
Other DBs
NCBI-GeneID: 8272178
NCBI-ProteinID: XP_048230635
LinkDB
Position
5:complement(4146796..4162842)
AA seq 925 aa
MRSRDDKRAKLGKERENLDDISKEGVDKLVRRVNNKSNARTKENKKEDTKITWNEVDDDS
RKEIYSESFNISKRNNSDDDDNVDWEDGSASMLDFAKNSLGGGLTIEFSESPDSVKKKPI
RRATAQEKELAELVHKVHLLCLLARGRIIDSACDDPLIQASLLSLLPAHLLKISGVSKLS
ANALSPLVSWFHNNFHVRSSFGEKRPFQSALAFALETHEGTPEEIAALSVALFRALNLTT
RFVSILDVASIKPDADKCESATQDMSRDYRGVFNTSTLMVDRPKEVSMSPKLFSCNEKSN
VCETSAKASCISNYPRSKKTHCESPLAAAELENQTTASESCSSSKSQGSKRKGDLEFEMQ
LQMALSATAIEAPQISMGSDVISLINDTSNISSSLKRIKMVGSEESPIHGISTALGSRKI
GSPLYWAEVYCSGENLTGKWVHIDAVNAIVDGEQKVEASAAACKTSLRYVVAFAGHGAKD
VTRRYCMKWYKIASQRINSIWWDAVLAPLRELESGATGGMVPLEKHQANASNRHKIVNVS
GVSDCLIQDNFPMHANLSEKLGSFKGPEVPERKTDIESSGRNSFVSTRTSLEDMELETRA
LTEPLPTNQQAYKNHQLYAIERWLTKYQILHPRGPVLGFCSGHPVYPRACVQTLKTEHRW
LREGLQIKANECPTKVLKQSANLKKVKSSEDDDYSEVDPKGNIELYGKWQLEPLQLPHAV
NGIVPKNERGQVDVWSEKCLPPGTVHLRLPRVFHVAKRLEIDYAPAMVGFEFKNGRSVPI
FEGIVVCAEFKDAILEAYAEEKEIREAEEKKRNEAQAISRWYQLLSSIITRQRLNDRYGN
SSSLQMSSGIQDRNNKLVHVHNEPKKKSQRCQEEGNQKPKSDAPSVVITEDHEHVFLAED
QSFDEESSMRMKRCHCGLLIQVEEL
NT seq 2778 nt   +upstreamnt  +downstreamnt
atgcgcagtagagacgataaaagagcgaaattgggtaaagagagagaaaatttggatgat
atttcaaaggaaggagtagataaacttgtaaggcgtgttaataataaaagtaatgcaaga
accaaagaaaataaaaaggaagatacaaaaataacatggaatgaagttgatgatgattca
agaaaagaaatttacagtgaaagttttaatatttcaaagaggaataacagtgatgatgat
gataatgttgattgggaagatggttctgcttcaatgctggactttgcaaagaatagttta
ggcggtggcttgactattgagtttagcgagtctcctgattctgttaagaagaagcctatt
cgtcgagctacggctcaagaaaaggaattggcagagcttgtacacaaggttcatttactt
tgtttacttgctaggggaagaataattgatagtgcttgtgatgatcctctcattcaggcc
tctttactttctctgctgccagcacatttgttgaaaatatcaggagtgtcaaaactcagt
gctaatgctttatctcctcttgtcagttggtttcataataactttcatgttagaagctct
ttcggcgagaaaagaccatttcaatcagctttggcctttgcacttgaaactcatgaagga
actccagaagagattgcagcattgtctgtggcactattcagagctttgaatcttacaacc
cggtttgtgtccattctagatgttgcctcaataaaacctgatgctgacaaatgtgaatct
gctactcaagatatgagcagagattacaggggggttttcaatacttcaacattgatggta
gatagaccaaaagaggtttctatgtctcctaagttattttcatgcaatgagaaaagcaat
gtgtgtgaaacttctgcgaaggcttcttgcataagtaactacccaaggagcaagaaaact
cactgtgaaagtccccttgctgcagctgaattggaaaatcaaacaacagcttctgaatca
tgtagtagctcaaaatctcagggttcaaagaggaaaggtgatcttgaatttgagatgcag
ttacaaatggctctctctgcaacggcaattgaagctcctcaaattagcatgggatcagat
gtgataagcttgattaatgatacatcaaatatctcttcttcacttaaaagaattaagatg
gttggaagtgaggaatctcccatccatggaatctcaactgcacttggatcaagaaaaata
ggatctcctctgtattgggcagaagtatactgtagtggagaaaacttgacagggaaatgg
gttcatatagatgctgtaaatgcaattgtagatggagagcaaaaggttgaagcctcagct
gctgcatgtaaaacttctttgagatacgtggttgcttttgctgggcatggtgctaaagat
gtgacccgcaggtattgtatgaagtggtacaagatagcatcacaaagaattaactcaatt
tggtgggatgcagtgttggccccgttaagggagttggaatcaggagctacagggggtatg
gttcctctggaaaagcaccaagccaatgcctcaaatagacataaaattgtgaatgtatca
ggagtgtctgattgtttaatacaggataattttccaatgcatgccaacttgtctgagaag
ttagggtcctttaaagggcctgaagttcctgagaggaagactgatatagaatcttctggg
aggaactcttttgtttcaactaggacctctcttgaggatatggagttggaaactagggca
ctaactgagcctctccccactaatcagcaggcctacaaaaatcatcaactatatgctatt
gaaagatggcttacaaagtatcagatacttcatcccaggggtcctgttctgggattctgt
tctggtcatccagtttatcctcgtgcttgtgtgcaaacactcaaaacagaacatagatgg
ttgcgtgaaggactgcagattaaagccaatgaatgtccaacaaaggtattgaaacaatct
gcaaaccttaagaaagtaaaatcttcagaagatgatgactacagcgaagtggatcctaaa
ggaaatattgaactttatgggaagtggcagctggaacccctgcagttgcctcatgctgta
aatggcattgtgccaaagaatgagcgtggtcaagttgatgtgtggtctgaaaagtgcctg
ccaccagggaccgtgcacttgaggctgccaagggtatttcatgttgccaagagactggaa
attgattatgcacctgccatggttggatttgaattcaaaaatggtcgatctgtccctatc
tttgagggtattgtggtgtgtgcggaatttaaagatgcaatcttagaggcatatgctgaa
gaaaaagagatcagagaagctgaagagaagaaaagaaatgaagcacaggctatatctagg
tggtatcaacttctttcatcaatcataactcgacaaaggttgaatgaccgttatgggaac
agttcgtcattgcagatgtcaagtggtatccaagatagaaataataaattagtacatgtt
cataatgaacctaagaagaaatctcagagatgccaggaagaaggcaatcagaagcccaaa
tcagatgctccttcagtggttataacagaagatcacgagcatgtatttttggctgaagat
cagagttttgatgaggagagttcaatgaggatgaagcgatgtcattgtggacttttaatc
caagtggaggaattatag

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