Ricinus communis (castor bean): 8272178
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Entry
8272178 CDS
T01087
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
8272178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8272178
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
8272178
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
8272178
NCBI-ProteinID:
XP_048230635
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Position
5:complement(4146796..4162842)
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AA seq
925 aa
AA seq
DB search
MRSRDDKRAKLGKERENLDDISKEGVDKLVRRVNNKSNARTKENKKEDTKITWNEVDDDS
RKEIYSESFNISKRNNSDDDDNVDWEDGSASMLDFAKNSLGGGLTIEFSESPDSVKKKPI
RRATAQEKELAELVHKVHLLCLLARGRIIDSACDDPLIQASLLSLLPAHLLKISGVSKLS
ANALSPLVSWFHNNFHVRSSFGEKRPFQSALAFALETHEGTPEEIAALSVALFRALNLTT
RFVSILDVASIKPDADKCESATQDMSRDYRGVFNTSTLMVDRPKEVSMSPKLFSCNEKSN
VCETSAKASCISNYPRSKKTHCESPLAAAELENQTTASESCSSSKSQGSKRKGDLEFEMQ
LQMALSATAIEAPQISMGSDVISLINDTSNISSSLKRIKMVGSEESPIHGISTALGSRKI
GSPLYWAEVYCSGENLTGKWVHIDAVNAIVDGEQKVEASAAACKTSLRYVVAFAGHGAKD
VTRRYCMKWYKIASQRINSIWWDAVLAPLRELESGATGGMVPLEKHQANASNRHKIVNVS
GVSDCLIQDNFPMHANLSEKLGSFKGPEVPERKTDIESSGRNSFVSTRTSLEDMELETRA
LTEPLPTNQQAYKNHQLYAIERWLTKYQILHPRGPVLGFCSGHPVYPRACVQTLKTEHRW
LREGLQIKANECPTKVLKQSANLKKVKSSEDDDYSEVDPKGNIELYGKWQLEPLQLPHAV
NGIVPKNERGQVDVWSEKCLPPGTVHLRLPRVFHVAKRLEIDYAPAMVGFEFKNGRSVPI
FEGIVVCAEFKDAILEAYAEEKEIREAEEKKRNEAQAISRWYQLLSSIITRQRLNDRYGN
SSSLQMSSGIQDRNNKLVHVHNEPKKKSQRCQEEGNQKPKSDAPSVVITEDHEHVFLAED
QSFDEESSMRMKRCHCGLLIQVEEL
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagtagagacgataaaagagcgaaattgggtaaagagagagaaaatttggatgat
atttcaaaggaaggagtagataaacttgtaaggcgtgttaataataaaagtaatgcaaga
accaaagaaaataaaaaggaagatacaaaaataacatggaatgaagttgatgatgattca
agaaaagaaatttacagtgaaagttttaatatttcaaagaggaataacagtgatgatgat
gataatgttgattgggaagatggttctgcttcaatgctggactttgcaaagaatagttta
ggcggtggcttgactattgagtttagcgagtctcctgattctgttaagaagaagcctatt
cgtcgagctacggctcaagaaaaggaattggcagagcttgtacacaaggttcatttactt
tgtttacttgctaggggaagaataattgatagtgcttgtgatgatcctctcattcaggcc
tctttactttctctgctgccagcacatttgttgaaaatatcaggagtgtcaaaactcagt
gctaatgctttatctcctcttgtcagttggtttcataataactttcatgttagaagctct
ttcggcgagaaaagaccatttcaatcagctttggcctttgcacttgaaactcatgaagga
actccagaagagattgcagcattgtctgtggcactattcagagctttgaatcttacaacc
cggtttgtgtccattctagatgttgcctcaataaaacctgatgctgacaaatgtgaatct
gctactcaagatatgagcagagattacaggggggttttcaatacttcaacattgatggta
gatagaccaaaagaggtttctatgtctcctaagttattttcatgcaatgagaaaagcaat
gtgtgtgaaacttctgcgaaggcttcttgcataagtaactacccaaggagcaagaaaact
cactgtgaaagtccccttgctgcagctgaattggaaaatcaaacaacagcttctgaatca
tgtagtagctcaaaatctcagggttcaaagaggaaaggtgatcttgaatttgagatgcag
ttacaaatggctctctctgcaacggcaattgaagctcctcaaattagcatgggatcagat
gtgataagcttgattaatgatacatcaaatatctcttcttcacttaaaagaattaagatg
gttggaagtgaggaatctcccatccatggaatctcaactgcacttggatcaagaaaaata
ggatctcctctgtattgggcagaagtatactgtagtggagaaaacttgacagggaaatgg
gttcatatagatgctgtaaatgcaattgtagatggagagcaaaaggttgaagcctcagct
gctgcatgtaaaacttctttgagatacgtggttgcttttgctgggcatggtgctaaagat
gtgacccgcaggtattgtatgaagtggtacaagatagcatcacaaagaattaactcaatt
tggtgggatgcagtgttggccccgttaagggagttggaatcaggagctacagggggtatg
gttcctctggaaaagcaccaagccaatgcctcaaatagacataaaattgtgaatgtatca
ggagtgtctgattgtttaatacaggataattttccaatgcatgccaacttgtctgagaag
ttagggtcctttaaagggcctgaagttcctgagaggaagactgatatagaatcttctggg
aggaactcttttgtttcaactaggacctctcttgaggatatggagttggaaactagggca
ctaactgagcctctccccactaatcagcaggcctacaaaaatcatcaactatatgctatt
gaaagatggcttacaaagtatcagatacttcatcccaggggtcctgttctgggattctgt
tctggtcatccagtttatcctcgtgcttgtgtgcaaacactcaaaacagaacatagatgg
ttgcgtgaaggactgcagattaaagccaatgaatgtccaacaaaggtattgaaacaatct
gcaaaccttaagaaagtaaaatcttcagaagatgatgactacagcgaagtggatcctaaa
ggaaatattgaactttatgggaagtggcagctggaacccctgcagttgcctcatgctgta
aatggcattgtgccaaagaatgagcgtggtcaagttgatgtgtggtctgaaaagtgcctg
ccaccagggaccgtgcacttgaggctgccaagggtatttcatgttgccaagagactggaa
attgattatgcacctgccatggttggatttgaattcaaaaatggtcgatctgtccctatc
tttgagggtattgtggtgtgtgcggaatttaaagatgcaatcttagaggcatatgctgaa
gaaaaagagatcagagaagctgaagagaagaaaagaaatgaagcacaggctatatctagg
tggtatcaacttctttcatcaatcataactcgacaaaggttgaatgaccgttatgggaac
agttcgtcattgcagatgtcaagtggtatccaagatagaaataataaattagtacatgtt
cataatgaacctaagaagaaatctcagagatgccaggaagaaggcaatcagaagcccaaa
tcagatgctccttcagtggttataacagaagatcacgagcatgtatttttggctgaagat
cagagttttgatgaggagagttcaatgaggatgaagcgatgtcattgtggacttttaatc
caagtggaggaattatag
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