Ricinus communis (castor bean): 8272182
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Entry
8272182 CDS
T01087
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8272182
09122 Translation
03013 Nucleocytoplasmic transport
8272182
03015 mRNA surveillance pathway
8272182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8272182
03041 Spliceosome [BR:
rcu03041
]
8272182
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8272182
TREX complex
8272182
Spliceosome [BR:
rcu03041
]
Complex C
Other components
EJC/TREX
8272182
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8272182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
DUF5320
Motif
Other DBs
NCBI-GeneID:
8272182
NCBI-ProteinID:
XP_048229602
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All DBs
Position
5:4183919..4189286
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AA seq
275 aa
AA seq
DB search
MSTSVDMSLDDIIKKNRERGRGGRGRARRGRGRGGSFSGGRMTGAGRKGPLSVNARPSQF
SIAKASSKLWTPNRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRE
LFAEIGDLKRYAVHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVT
GEAPISARVNVTGINGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGLRNLGRGRGRGR
GRGGHGGRGKKQPLEKSADELDKELDTYHAEAMQS
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttctgtggatatgtctcttgatgacattataaagaagaacagagagagaggt
agaggaggacgtggcagggcccgacgtggccgtggccgaggtgggtcgtttagtggtgga
agaatgacaggagcaggtcgcaaaggtcccctttcggtgaatgctcggccatcacaattt
tcaattgccaaggcaagctcaaaactgtggacgcctaatcgcagaatcaggaacctgcct
tggcagcatgatttgcttgaagatagcattagagctgcagggataactggagtagaagtt
ggtaccaaattatatgtttcaaacttggagtatggagtgtccaatgaagatataagggag
ctttttgctgagattggggatctgaagcgatatgctgttcactatgacaaaaatggtcgc
tctactggttctgctgaagtagtttatacaaggaggagtgaagcatttgcagctctcaag
aagtacaacaatgtactgttagatggaaagcccatgaagattgagattgtgggtgttact
ggagaagcacccatctcagcccgagttaatgtaactggaataaatgggaggaggaagcgt
acagttgttatgacgcctggtccaggtcgtggaagaggcttcgctccaagtaatcgtggt
gctggtcagagaagtcgtgggggtttgagaaatcttggacgaggtcgaggtcgtggccga
ggacgtggaggccatggtggccgtggaaagaagcaacctttggaaaagtctgcagatgag
ctcgacaaagaattggatacttatcatgctgaagccatgcaaagttag
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