Ricinus communis (castor bean): 8272807
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Entry
8272807 CDS
T01087
Name
(RefSeq) eukaryotic initiation factor 4A-3 isoform X1
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8272807
09122 Translation
03013 Nucleocytoplasmic transport
8272807
03015 mRNA surveillance pathway
8272807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8272807
03041 Spliceosome [BR:
rcu03041
]
8272807
03009 Ribosome biogenesis [BR:
rcu03009
]
8272807
03012 Translation factors [BR:
rcu03012
]
8272807
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8272807
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8272807
mRNA cycle factors
Stress granule specific factors
8272807
Spliceosome [BR:
rcu03041
]
Complex C
Other components
EJC/TREX
8272807
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
90S particles
Helicases
8272807
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
eIF-4
8272807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
8272807
NCBI-ProteinID:
XP_048233949
LinkDB
All DBs
Position
8:complement(758786..763496)
Genome browser
AA seq
407 aa
AA seq
DB search
MATSVVPAGRSARRAAAEDEKFVFETTEGIEPITNFDEMGIKSDLLRGIYAYGFEKPSAI
QQRAVMQIIKGRDVIAQSQSGTGKTSMIALTACQLVDTSSREVQALILSPTRELAAQTEK
VILAIGDYINIQAHACIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEMTNKFMTDPIKILVKRD
ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLSITQAVIFCNTKRKVDWLTEKMRNNNFTV
SSMHGDMPQKERDAIMGEFQSGTTRVLITTDVWARGLDVQQVFLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRSDDIKILRDMEQYYSTQIDEMPMNVVDLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaagcgttgtaccggcgggaaggagcgcgagaagagcagcggcggaggatgag
aaatttgtgttcgagacaacagagggcatagaacctataacgaacttcgacgagatgggc
ataaagagcgatctgcttagagggatttacgcgtacggctttgagaagccttcggcaatc
caacagagggcggttatgcaaataatcaaagggcgtgatgtcatagcccaatcgcaatct
ggtaccggcaagacctctatgattgctctcactgcttgccaactcgttgatacctctagt
agagaggtccaggcactaatattgtcacctacaagggaactggcagctcagactgagaaa
gtaatattggcaattggtgattacattaatattcaagcacatgcatgcattggaggcaaa
agtgtgggtgaggatattcgaaagcttgaatatggggttcatgttgtgtctggaactcca
ggcagagtctgtgacatgataaagaggaggacattacgtactagagccattaaattgcta
gttcttgatgagtctgatgagatgttgagcagagggttcaaggatcaaatttatgatgtg
tacagatatcttccccctgaacttcaggttgtcttgatttctgctacccttcctaatgaa
attttggagatgacgaacaaattcatgacagatcctataaagattcttgtgaaacgtgat
gaattgacattggagggcatcaagcaattttttgtagcagttgaaagggaagaatggaaa
tttgatactttgtgtgatctttatgatactcttagcattacacaagcggttatattctgc
aatacaaagcgaaaggtggattggcttactgaaaagatgcggaacaataactttacagtt
tcatcaatgcatggtgacatgccacaaaaggagagagatgcaattatgggagaattccag
tctggtacaaccagagtcttgataactactgatgtttgggctcgggggcttgatgttcaa
caggtttttctggtgattaattatgatcttccaaacaatcgagagctttacatccatagg
attggtcgttcaggtcgttttggacgcaagggtgttgccataaatttcgtcagaagtgat
gatatcaagattttaagagatatggagcagtactatagtacccagattgatgaaatgccg
atgaatgttgttgatctgatctga
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