Ricinus communis (castor bean): 8273417
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Entry
8273417 CDS
T01087
Name
(RefSeq) vacuolar sorting protein 39 isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
8273417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8273417
Membrane trafficking [BR:
rcu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
8273417
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
zf-HC5HC2H
AlaDh_PNT_N
DUF2247
DUF2175
Motif
Other DBs
NCBI-GeneID:
8273417
NCBI-ProteinID:
XP_048230102
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Position
5:95482..104484
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AA seq
1002 aa
AA seq
DB search
MVHSAYDSFELLSRCPTKIDAIESYGSKLLVGCSDGSLRIYGPESSVSERSDYLGQSQEL
RRECYLLERTVTGFSKKGLLSMEVLASRELLLSLSESIAFHRLPNLETLAVITKAKGANV
YSWDDRRGFLCFARQKRVSIFRHDGGRGFVEVKDFGVPDTVKSMSWCGENICLGIRKEYM
ILNATNGALTEVFPSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLLQAERICWSEAP
SVVVIQKPYAIALLPRRVEIRSLRVPYPLIQTIVLQNVRHLIQSNNSVIVALDNSVYGLF
PVPLGAQIVQLTASGDFEEALALCKLLPPEDASLRAAKEGSIHIRYAHYLFDNGSYEEAM
EHFLASQVDITYVLSLYPSIVLPKTSMVPEPEKLMDITSDAPYLSRGSSGVSDDTELSPP
LQSIEFDERAALESKKMSHNTLMALIKFLQKKRYSIIEKATAEGTEEVVLDAVGDSFGPY
DSSRFKKSNKGRGNISINSGAREMAAILDTALLQALLLTGQSSAALELLKGVNYCDLKIC
EEILQKGNHHAALLELYKCNSMHREALKLLHQLVEESKTQAEIISKFKPESIIDYLKPLC
GTDPMLVLEFSMLVLESCPTQTIELFLSGNIPADLVNSYLKQHAPSMQGRYLELMLAMNE
NGISGNLQNEMVQIYLSEVLDWHADLIAQQKWDEKDYSPTRKKLLSALESISGYNPEALL
KRLPADALYEERATLLGKMNQHQLALSLYVHKLHVPELALCYCDRVYESPANQVSAKSSA
NIYLTLLQIYLNPQKTIKNFEKRIINIVSSQNISIPKVSSGASVKSKGGRGAKKIAAIEG
AEDMRVSLGSTDSGRSDGDADEFSEEGGSMIMLDEVLDLLSRRWDRINGAQALKLLPKET
KLQNLLPFLGPLMRKSSEAYRNLSVIKSLRQSENLQVKDELYNHRKTVVKITSDSMCSLC
NKKIGTSVFAVYPNRKTLVHFVCFKDSQSMKAVVKGSPLRKR
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggtacacagtgcctacgattctttcgagctcctgagcagatgcccaacgaagatcgat
gcaattgaatcctatggctcgaagcttttggttgggtgttcggacggttcccttcggatc
tacggcccagagtcgtccgtctcagagcgatcagattacctcgggcaatcacaagagctg
cgaagggaatgctacttattggagagaacagtgacagggttttcaaagaagggcttgtta
tcaatggaggtattggcatcaagagagctcctcttatcgctctctgagtccatcgctttt
cacagactgcctaatttggagaccttggcagtcatcaccaaagctaaaggtgccaatgtc
tattcatgggatgataggagaggtttcttatgtttcgctaggcaaaagcgagtcagtatt
ttcagacatgatgggggaagaggatttgtagaggtgaaggattttggcgttccggatacg
gtgaagtcaatgtcatggtgtggtgaaaatatatgtttagggattagaaaggaatatatg
atactaaatgctactaatggtgcattgactgaagtgtttccttctgggagactagcccct
cctttggtcgtctctctaccttctggggagcttcttcttggaaaggagaatattggggtc
tttgtggaccaaaacggcaagcttcttcaagcggagaggatttgttggtcagaggcccct
tctgttgttgtcattcagaaaccatatgcaatagcgctgctcccaagacgtgtggagata
cgatctctccgagttccatatccattaattcagaccattgtgcttcaaaatgttcgtcat
cttattcaaagcaataattcagtaattgttgcactagacaattctgtatatggcctcttc
cctgttcctcttggtgcacagatcgtccagttaacagcatctggagatttcgaggaagct
ttggccttatgtaagctgcttccacccgaagatgccagtcttcgagcagcaaaggagggt
tcaattcatataagatatgctcactatctttttgataatgggagctatgaggaggctatg
gaacactttttagcatcccaagtggatatcacctacgtgctatctctgtatccatccatt
gttcttcccaaaacatctatggttcctgaaccagaaaagctaatggatattacttcagat
gccccatatctctcaaggggttcatctggagtgtcagatgatacagaattgtcacctcca
ttgcagtcgattgagtttgatgaacgtgctgccctggaatcgaagaaaatgagtcataat
acacttatggctctcattaagttcttgcagaagaagagatacagtataattgagaaggcc
accgctgaggggacagaagaagttgttttagatgctgttggggatagttttggtccttat
gactccagtaggtttaagaaatccaacaagggacgtggtaacatttccattaactcaggc
gctagggaaatggcagcaatattggatacagcactacttcaagctcttcttcttactgga
cagtcttcagcagctttagaattactcaaaggtgttaactattgtgacctaaagatatgt
gaggagattcttcaaaaaggaaatcatcatgctgctttattggaactttacaaatgcaac
tccatgcaccgtgaagctcttaaacttttgcatcaattagttgaagagtcaaaaactcaa
gctgaaattatctcaaagttcaagcctgaatcaattatagattatctcaagcctctctgt
gggacagaccccatgctcgtcctggagttctcaatgcttgttctagaaagctgtccaacg
caaactattgagctttttttgtccgggaatattcctgcagaccttgttaactcttatttg
aagcagcatgctccaagcatgcaggggaggtatttagaactcatgctagcgatgaatgaa
aatgggatctctggcaacttgcagaatgaaatggtacaaatctatctatcagaagtactt
gattggcatgctgacctgattgctcaacagaaatgggatgagaaggattattccccaaca
aggaagaaattattgtctgcattggaaagtatctcaggctataacccagaggctttgttg
aaacgtcttccagcagatgcattatatgaagagcgtgcaactttgctggggaaaatgaac
caacatcagcttgccttatctctctatgttcataagcttcatgttcctgaactggcactg
tgctattgcgatcgggtttatgagtctccagcgaatcaagtatctgcaaaatcctctgcc
aatatatacctcacacttctgcaaatttatttgaatccacaaaaaacgatcaaaaacttt
gaaaagagaattataaatatagtatcctctcagaatataagtattcctaaggtcagctct
ggggcttcagttaaatctaaaggaggtcgtggagcaaagaaaattgctgcaatagagggt
gcagaggatatgcgcgtaagtcttggtagcactgacagtggcagaagtgatggtgatgca
gatgaatttagtgaggaaggaggttctatgattatgcttgatgaggtccttgaccttttg
agcagaaggtgggatagaatcaatggagctcaggccctcaaacttttgccaaaggaaaca
aaattgcagaacttgcttccttttcttggacctctcatgagaaaatccagtgaagcatac
aggaatctctcagttatcaagagcttgaggcagagtgagaacctacaggtgaaagatgag
ctgtacaaccacaggaagacagttgtgaagatcaccagtgatagtatgtgctctctttgt
aacaagaaaattggaacgagtgtttttgctgtttatcccaatcggaaaacacttgtccac
tttgtttgcttcaaggattctcagagtatgaaagctgtggtcaaggggtcaccactgaga
aagcgatga
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