Ricinus communis (castor bean): 8273476
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Entry
8273476 CDS
T01087
Name
(RefSeq) polygalacturonase At1g48100
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Module
rcu_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8273476
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
8273476
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Beta_helix
Pect-lyase_RHGA_epim
NosD
Motif
Other DBs
NCBI-GeneID:
8273476
NCBI-ProteinID:
XP_002527898
UniProt:
B9SPH9
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Position
7:27082583..27086501
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AA seq
477 aa
AA seq
DB search
MKKNKNIPRLFFIFVMIAAFTMFTMISVDARKHHHNKKSKSHKHIKDRSGNGNNAPDSAT
VPSPAPAPLPHYGYSYPTQSNIFDVLSFGAKGDGVSDDSKALLAAWKAACKVPGATVEIP
AEFKFLIKPITLQGPCMPHLVLQIDGTVLAPPEVGSWPKSSLFQWFNFKWVHDFTIQGTG
SVNGQGFYWWTPSNVYFIQKRFKHIPDMKPTALRFYASYNVTVRNIEIINSPQCHLKFDN
SKGIKVNNITISSPENSPNTDGIHLQNTQDVEIQHSNIGTGDDCISIQTGCSNIHVHHIN
CGPGHGISLGGLGKDKSVACVSNIVVEKISLHNTLAGARIKTWQGGLGSVKNVSFSNIQV
SDVKYPIIIDQFYCDKHICKNQTEAVAISGVKFDQIIGSYITQPIHLACSKDVPCIDVDL
IDIQLKPSPGYRSFRQALCWNSYGKSQAPLVPSSIDYCLKRDSGWIKRVARSHENLC
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaacaagaatatacctcgtctattcttcatctttgttatgatagctgccttc
actatgtttaccatgatttcagtagacgcaagaaagcatcatcacaacaagaaaagcaaa
tcccacaagcacatcaaggataggagtggcaatggcaacaatgctccagattcagctact
gttccaagcccagcaccagctcctcttcctcactatggttactcttatcctacccaatcc
aatatttttgatgttctgtcatttggagccaaaggtgatggagtatctgatgactctaag
gcacttctagctgcatggaaagcagcttgcaaggtacctggagctacagtagaaatacca
gcagaattcaagtttcttatcaagcctattactcttcaaggtccatgtatgcctcacctt
gttcttcagattgatggaactgtcttagctcctccagaagtaggctcttggcctaaatcc
agcctgtttcagtggttcaacttcaaatgggtccatgacttcacaattcaaggcactggc
tctgtcaatggccaaggattttattggtggactccctctaacgtctattttattcagaag
agattcaagcatattcctgacatgaaaccaacggctttgagattctatgctagttataat
gttacagttcgtaatattgaaatcataaacagccctcaatgccatctcaaattcgataac
tctaaagggataaaggtcaataacatcacaatttcctcgccagagaatagtccaaatact
gatggtattcacttgcaaaatacacaagatgtagaaattcagcattctaatattggaact
ggagatgactgtatatccatacaaactggttgctctaatatccatgttcatcatattaac
tgtggtccaggacatggtataagcttaggaggactagggaaagataaaagtgtggcatgt
gtctccaatattgttgtggagaaaatctcactgcataataccttagctggagctagaatt
aagacatggcagggaggcctgggatcggtaaagaatgtatcattttccaatatccaagta
tcagatgttaagtatcctataataattgatcagttttattgtgacaagcatatctgcaag
aaccaaacagaagctgtggccatatctggtgttaaatttgatcaaataattggaagttac
ataacacagcctattcatttagcgtgtagcaaagacgtgccctgtatagatgttgaccta
attgacattcagttgaaaccttctccaggataccgaagttttcgacaggctttatgttgg
aattcatatgggaaatcacaggcaccccttgttccttcaagcatagactattgcctaaag
agggatagtggctggatcaagagagtagcaaggtcacatgagaatttatgctag
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