Ricinus communis (castor bean): 8274115
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Entry
8274115 CDS
T01087
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog B isoform X1
KO
K11267
sister chromatid cohesion protein PDS5
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcu03036
]
8274115
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8274115
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
8274115
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
8274115
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
HEAT_GCN1_C
HEAT_GCN1
Aegyptin_C
TPR_DNAAF5
PTM_DIR17_Tudor
Cnd1
Motif
Other DBs
NCBI-GeneID:
8274115
NCBI-ProteinID:
XP_015571529
UniProt:
A0ACL1FJY9
LinkDB
All DBs
Position
2:complement(6736909..6755026)
Genome browser
AA seq
1428 aa
AA seq
DB search
MDESSLQLVSEIGIQLGRLARPNKDFLVKSLRQAANALAQIEPPSPPEASRKKEAVNKLA
SGIKPLGKSFVKHGLLRNSDKDVKLLVAICISEIFRILAPEPPFEDKYLRDVFKLILSMF
AELADTTSPYFSRRVKILETVARCKCFVILLDIDCNDLVLEMFNIFFSIVRENHQRSLIN
DVLSIMTHILNEEASLPLSDVILRNLVKEGTAASAAASQLAASVIQSCAEKLEPFICGFL
TSCSLDRDAIDSELKEFYHEILFKVFQCAPQMLLAVIPNLTQELLTDQVDVRIKAVNLIG
RLFALPEHHVAEKYHNLFIEFKNRFSDKSVEVRLSALRCAKACYMANPSGKESSELLSAV
EGRLLDFDDRVRILAVVVVCDLARFNLKYFSAELLSKAVERLRDKKISVRKKALQKLMEV
YQEYCNKCSESYLTIGGHFEQIPCKILMLCYDKDCKEFRSQNMEPILAEDLFPARLSVED
RTRHWIHFFSLFTPLHVKALNSILSQKRRLQNEMQSYLALRKKEKESGSEEMQKRIKNSF
MKMSASFPDPSKAEECFHKLNQMKDNNIFNSLELLLVERTIINAQTTRDKFLKMIGDKHP
HFEFLQLLSSKCSFNIFSSEHVRCILDHLSSDAVGNGRLEASSANLLLTIINVFPSLLRG
FEEQFRLLLQEKNMINDVLIEALAKAGPYISVKFSDFYPLLESACLEGTRIQSKQAVSAI
ASLIGSSEQLIFSKLCKELVDSLHRGWNTPTILQSLGCIAQHSVAAFESKYREIRSYIFQ
RIFQVEQSDDLTIFYESSECCHSCKLKIYGVKTLVKSFLPHQGSHVNRQIDELLDILLKL
LQTGDAIDGIITCVNDKPHVRLAAAKSVLRLSRRWDLHISPEIFRSTILVAKDLSSLVRR
SFLNKTHKLLKEHAIPNRYACAFVLAASDFCEDLQDAPFKYMEEFVKEYNIVARNRQNSA
VQEGTVTDYPAYIVVFLIHTLAHSTGFPPEDSRDEQEYAHFCRPLFLVVQALLSANIANG
DADLVNDAVMYLLSIFRAIKRAEDALDATKTPKLQILAEIGISIVNALNLNGITLSRAPG
MIFLPSSFYRISSVKKCDEASLKCLNQFSVDESFVKRIVHSLKSQISMPASSLPKRGRKC
QADGIQSAKYNTLNMAPLDHANLLRTETIDMQKLVSPDISLRHRKKSAASESVGLHNEVS
RTNASKSSKSMKKDVSSSCDSATTRPSANESQTLIWTVDGTIPYLKESGRASSRLTAESS
KRTTSKPNEPCCSRTFSTENEALIGKRVKLLSPVDRCFYSGTVVGFNPGNNTHKISYDSG
EVELLCLDSESWETVSDSPTEKETTFADQHKKSHSSEWNLKETVNTFGDGATTQSNHLAN
KENEKVSNGMTSFPAKGRKGQKLSSDTPASVVTNNEDAFVRRTRRRKV
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atggacgagtcgtcgttgcagctcgtttcagaaatcggtattcaactcggtcgactcgct
cgcccaaacaaagacttccttgtcaaatctcttcgacaagctgcgaatgcattagctcaa
attgagccgccgtcgccacctgaagcttctagaaagaaagaagcagtgaataaactagca
tctggtataaagccccttggcaaatcttttgtcaagcatggccttctccgcaatagcgac
aaagatgttaaacttctggtggccatttgcatcagtgaaattttcaggatccttgcacct
gaaccacctttcgaggacaaatatcttagggatgtttttaaacttattctcagcatgttt
gcggagcttgctgatacaacaagcccgtacttttcgaggagggttaaaatattggaaact
gttgcaagatgtaaatgctttgtgattttgttggatattgactgcaatgatctagttctt
gaaatgttcaacatctttttctctattgtgagggaaaaccatcagaggagtttgattaat
gatgttttgtctataatgacacatattttgaatgaggaggcttctctgccactttcagat
gtgattctacgtaatcttgtaaaggaaggaacggctgcatcagccgctgcttctcagctt
gctgcttctgtcattcaaagttgtgcagaaaagcttgagccctttatctgtggattctta
acttcttgttccttggatagagatgctattgacagtgagctgaaagaattttaccacgaa
atattgtttaaagttttccagtgtgctcctcagatgcttctggctgtcatccctaacttg
acccaagagttactgactgatcaggttgatgtccgaataaaagctgttaatttaattgga
aggctctttgcactacctgaacatcatgttgcagagaagtatcacaatcttttcatagag
ttcaaaaatagattctctgataaatctgttgaagttagactcagtgctctacgatgtgct
aaagcttgctatatggccaatccatctgggaaagaatcatctgaacttctgtctgctgtc
gaaggtcgtttgctggattttgatgacagagtgcgaatactggcagtcgttgttgtctgt
gatcttgccaggtttaatttaaaatatttttcagcggaactattatcaaaagctgttgaa
agacttcgggataagaagatatctgttaggaaaaaggctttgcagaaattgatggaggta
tatcaagaatattgtaacaaatgctctgaaagctacttgactataggcggccactttgaa
cagattccttgtaaaatcctaatgctttgctatgataaagattgtaaagagtttaggtcc
caaaacatggagcctattcttgctgaggatttgtttccagctcgtctttctgttgaggat
aggactaggcattggattcatttcttctctcttttcactcctcttcatgtaaaggcgctg
aactcgatcttatctcagaaacgaaggctgcaaaatgaaatgcaaagttatttggcctta
cggaagaaagagaaggaaagtggctcagaagaaatgcagaagagaattaaaaattctttt
atgaaaatgtcagcatcctttccagatccttccaaagctgaagagtgctttcacaaattg
aaccagatgaaagataataacattttcaactcattggaactactgctggttgagcggaca
attataaatgcgcagacgacaagagataaatttctgaaaatgataggagataaacatcca
cattttgaattcctacaactactttcatcaaaatgctcattcaatatattcagctcagag
catgtacgttgtattttggatcatctttccagtgatgcagttggaaatggacgtttagag
gcttcttctgctaatttgcttctgactatcatcaatgtcttcccatcactattgagaggt
tttgaggagcagtttcgcctgttgttacaggagaagaatatgattaatgatgtgcttatt
gaagccttagcaaaggcaggtccttatatatcagtcaaattcagcgatttttatcctttg
ctggagagtgcgtgtctcgagggaactcggattcagtccaaacaagctgtttctgccatt
gcttcattgattggttcctctgagcagttgattttctcaaaactatgcaaggaacttgta
gattctctacatcgaggctggaacactcctaccattttacaatcattgggctgtattgca
caacattctgttgcagcgtttgaatcaaaatatagggagatcagatcatatatttttcaa
agaatttttcaagtggaacaatctgacgatcttacaattttttatgagagttctgagtgt
tgccattcttgcaaactgaagatttatggggtgaaaacacttgtcaagagtttcttgcca
catcaaggatctcatgtcaatcgccaaattgatgaattgctggatattttgctgaagttg
ctacaaacgggtgatgctattgatggaatcatcacatgtgtaaatgacaaacctcatgtg
agattagcagctgcaaaatctgttcttcgtctttccagaagatgggatttacatatatct
cctgaaatttttcgctcaacaattttggtagcaaaggacttatcttctttggttagaaga
tcattccttaacaaaacacacaagctgctaaaggagcatgctatacctaatagatatgcg
tgtgctttcgtattggctgcatctgatttctgtgaggatctgcaggatgctccatttaaa
tacatggaagaatttgtcaaggaatataatatagtagctcgaaatcgacaaaactctgct
gttcaagaagggacggttacagactatcctgcatatatagttgtattcttgattcatact
cttgctcatagcactggctttccacctgaggactctcgggacgaacaagagtatgctcat
ttttgtaggccactgtttttggttgtacaggcattgttaagtgctaatattgctaatggt
gatgcggatcttgttaatgatgctgtcatgtatttgctaagtattttccgtgctattaaa
agagctgaagatgctcttgatgctaccaaaactcctaaactgcaaatcttggcagagatc
gggatctccattgtaaatgcattaaatcttaatggcattacattatcacgtgctcctggg
atgattttcctgccttcatcattttatagaataagttcagttaagaagtgtgatgaggct
agtttaaaatgtctcaatcagttttctgttgatgaaagttttgtcaagagaattgttcat
agccttaagtctcaaatctctatgccagctagtagccttccaaaacgtggtagaaagtgt
caagcggatggaatacagtcagctaagtataacacactgaacatggcaccacttgatcat
gctaatttattaagaactgagacaatagatatgcaaaaacttgtgagtcctgatatcagt
ttaaggcataggaaaaagagtgctgcttctgaatcagtgggattacacaatgaggtttcc
agaactaatgcatctaaaagctctaaatctatgaagaaagacgtttcttcatcttgtgat
tccgcaaccactagaccttctgcaaatgaatcacaaactttgatatggactgttgatgga
actattccttatttgaaagaaagtggtagggcaagtagcagacttactgctgaatcttcg
aagcgtactacatccaaacctaatgaaccttgctgttcaaggacatttagtactgagaat
gaggcattaatcggaaagagagtcaaattattatctcctgttgatagatgtttctactca
ggcacagtggttggtttcaatcctggcaacaatactcacaagatctcgtacgatagtggt
gaagttgaattactatgcttagatagtgaaagctgggagactgttagtgattcacctaca
gagaaggagacgacatttgcagatcaacataaaaaatctcattcaagtgaatggaatttg
aaagaaactgttaatacatttggagatggtgccaccacacagtcaaaccacttagcaaac
aaggaaaatgagaaggtttctaatggaatgacttcttttcctgcaaagggaaggaaggga
caaaaattgtcctcagacaccccagcatcagtagtcaccaataatgaagatgcttttgtc
agaaggactcggcggcggaaagtgtga
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