Ricinus communis (castor bean): 8274193
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Entry
8274193 CDS
T01087
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
8274193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8274193
03036 Chromosome and associated proteins [BR:
rcu03036
]
8274193
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
8274193
Coactivators
SAGA/TFTC/STAGA complex
8274193
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
8274193
STAGA complex
8274193
TFTC complex
8274193
SAGA complex
8274193
SLIK complex
8274193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
WD40_like
WD_LRWD1
Cytochrom_D1
PALB2_WD40
PROPPIN
Motif
Other DBs
NCBI-GeneID:
8274193
NCBI-ProteinID:
XP_002515435
UniProt:
B9RNW6
LinkDB
All DBs
Position
3:complement(32459324..32465864)
Genome browser
AA seq
670 aa
AA seq
DB search
MDEEQVVKFVETYLKKKGFKQAELAFHDEVQRNSRANSVDVHSDPDLSTLLLSLSQSEDT
PARYHDEYGKLRSWTHSSLDLYKPELLRVLYPVFVHCYMDLVAKAHIQEARTFFNNFRED
HETMHSRDLQKLEGVLSPSHLEEMEFAHTLRQSKVNIKICQYSNELLMQYLRNTKSTMML
GIVNEHINFQVSPGQPSSISDDDEVVTLIGSSQDAANQINKKEIHWGLLEDSMEEHLEKA
GGLHSDSEKTEGEAKEGDMDESKKRSIEGGKQGTSVKKMKKDKATSATAKVVRPETNSAP
TAPRVKPELPLPVIPTEVEQSILEDLRNRVQLSSAALPSVSFYTFINTHNGLNCSSISHD
GSLVAGGFSDSSLKVWDMAKLGQQGSNSVLQGANDTAASEHFLGANGAKRSYTLFQGHSG
PVYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASAS
HDRTARIWSMDRLQPLRILAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRI
FIGHRSMILSLAMSPDGRFMASADEDGTIMMWDLSSGRCVSPLMGHNSCVWTLAFSCEGS
LLASGSADCTVKLWDVTSSTKVTKAEESKSGSANRLRSLKTLPTKSTPVYSLRFSRRNLL
FAAGVLSKSG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagagcaagtagtaaaatttgtggagacttatttgaaaaagaaaggatttaaa
caagcagagctcgcttttcacgatgaagttcaacgcaattcccgtgctaactccgtcgat
gtccactccgatcctgatctctccactctccttctttctctctcacaatcagaggatact
ccagcaaggtaccatgatgaatatggtaaattaaggtcatggacacatagttcacttgat
ttgtacaagccagagttgcttcgtgtgctttatccagtgtttgtccattgttatatggat
cttgtagcaaaagcgcatatccaagaggctagaactttcttcaacaattttcgcgaagac
catgaaacaatgcactcacgggatctccaaaagttggaaggagttctttctccctctcat
ctggaggagatggaatttgctcatactcttaggcagagtaaagttaacataaagatatgt
cagtactcgaatgagctcctgatgcagtacctacgcaacacaaaatctactatgatgctt
gggattgttaatgagcatattaacttccaagtttctcctggacagcccagctcaatatct
gatgatgatgaggttgtaacactaattggaagcagccaagatgcagctaatcagataaat
aagaaagaaatacattgggggctgcttgaagattctatggaggaacacttagagaaggca
gggggtttacactcggattctgaaaagacagaaggagaagccaaagagggggacatggat
gaaagcaagaaaagatcaatagagggtggaaagcaaggcacttctgtcaaaaagatgaag
aaagataaagctaccagtgcaacagctaaagttgtgcgtcctgagactaatagtgcacct
acggcaccgcgcgtcaaaccagagcttcctctgcccgtaatcccaacagaggtggaacag
tctattcttgaggacttgagaaatcgtgtacagctgagtagtgcggcactcccatccgtt
agcttttatacatttatcaatacacataatggtttgaactgttcttcaatatcccatgat
ggatctttggttgctggtggattctcagattcctcactgaaggtttgggatatggctaaa
ctggggcaacaaggtagcaattctgttttgcagggtgcaaatgatactgctgcaagtgaa
catttcctaggggcaaatggtgccaaaagatcctacacattatttcagggtcattcaggg
cctgtttattcagcaaccttcagtcctcttggggattttatactttcctcttcagcagac
acaacaattcgattatggagcacaaaactaaatgcaaatctcgtttgctacaagggtcat
aattaccctgtatgggatgttcagtttagtcctgtaggacattattttgccagtgcttca
catgatcgaacagcaagaatttggtccatggatagactacagcctttaagaatattggca
ggtcacctgtctgatgttgattgtgtacaatggcatgccaactgcaactatattgcaact
ggctccagtgacaaaacagttagactttgggatgtccaaagtggggaatgtgtccggatt
tttattggtcacaggagtatgattttatcattggcaatgtcaccagatggcagatttatg
gcttctgctgatgaagatggcacaattatgatgtgggacctttccagtggccgctgtgtt
tcacctttgatgggtcacaattcatgtgtatggacgctagctttcagttgtgaaggttca
ctgcttgcatccggttccgctgattgtactgtgaaattatgggacgtgacctcaagcaca
aaggtgacaaaggctgaagaaagcaaaagtggaagtgcaaacaggttgagatcattgaaa
acgctgccgacaaaatctactccagtctattccttaagattttctcggaggaatcttctg
tttgctgctggagtcctttctaaaagtggatag
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