Ricinus communis (castor bean): 8274693
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Entry
8274693 CDS
T01087
Name
(RefSeq) vacuolar protein sorting-associated protein 35B-like isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
8274693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8274693
Membrane trafficking [BR:
rcu04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
8274693
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
8274693
NCBI-ProteinID:
XP_048226652
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Position
2:1099975..1107886
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AA seq
790 aa
AA seq
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MILDRIEDEEKWLAEGIAAIQHNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKY
YDLYMRAFDELRKLEIFFKDESRHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYEGDAGTVMDAIEFVL
QNFTEMNKLWVRMQYQGPGRVREKQDKERSELRDLVGKNLHVLSQIEGVDLEIYRDTVLP
RVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLDTLLGACPQLQPAVDVKTVLSRLME
RLSNYAASSEDVLSQFLQVEAFTKLSSAIGKVIEAQTDMPIVGAITLYSSLLTFTLYVHP
DRLDYVDLVLGACVKKLSGKPKLEDSRATKQIVALLSAPLEKYNNAVTALTLSNYPLVMD
RLDNETNKLMAMVIIQSIMKNNTCISSADKVEVLFELVKGLIKDLDGTMVDELDEEDFKE
EQDSVARLIHMLYNNDPEEMLKIICTVRKHIMAGGPKRLPFTIPPLIFSALRLVRQLQGQ
DGDIVGEELPPTPRKIFQLVNQTIEALSSVPSPELALRLYLQCAEAANNCDLEPVAYEFF
TQAFVLYEEEIADSKAQLTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQC
RAVYACSHLFWMDDQGGIKDGERVLLCLRRALRIANAAQQMANVARGSSGPVILFVEILN
KYLYFFEKGNPQVTSGAIQSLIELINTEMQSDSTTPDSAANAFFASTVRYIQFQKQKGGI
MSEKYDPIKV
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgatcttagaccgcatagaagatgaagagaaatggcttgcagaaggaatcgctgccatt
cagcataacgccttttacatgcatcgcgctctggattcaaacaatctcagagacgccctc
aaatactctgctcagatgctgtccgagctccgaacttcaaaactctctcctcacaaatac
tacgacctatatatgagagcttttgatgaattaaggaagctggagatctttttcaaggac
gagagtagacacggcgtttccgtggtagatttatatgagctagtgcagcatgctggaaat
attttgcctagattgtatctgctatgtacggtaggatcagtttacattaaatcaaaggag
gcaccggcaaaagatgtgcttaaggatcttgtcgaaatgtgtcgtggtgttcaacatcca
attcgtggactctttcttagaagttaccttgctcaagttagcagagataaattgcctgat
attggttctgagtatgaaggagatgctggcacggtcatggatgctatagagtttgtgctg
caaaactttactgagatgaataaactttgggttcgaatgcagtatcagggacctggtcgg
gtaagagagaagcaggacaaggaaagaagcgagctacgtgatcttgtagggaagaatctc
catgttcttagtcaaatagaaggcgtggatcttgaaatatacagagacactgttcttccc
agagttttagagcaggttgttaactgtaaagatgagcttgcacaatattatctgatggat
tgcataattcaggtttttccagatgagtaccacttgcagacccttgacacattattaggt
gcttgtcctcagcttcagccagcagttgatgttaagacagtgctatcacggttgatggag
aggttatctaattatgctgcctcaagtgaagatgttttatcccagttcctgcaagtagaa
gctttcactaagttgagcagtgctatagggaaggtgatagaagctcagacagacatgcca
attgttggagccattacattgtactcatcccttcttacatttacactctatgtacatcca
gatcggctggattatgtggatctagtgctgggggcatgtgtgaagaagctttctggaaag
ccaaagcttgaagacagcagagcaacaaaacaaatagttgcacttctgagtgctccatta
gagaaatacaataatgctgtcactgccttgactctttcaaattatcctcttgtcatggac
cgccttgataatgaaactaacaagctcatggcaatggttatcattcaaagcattatgaaa
aataatacatgtatttctagtgctgataaggttgaagtgttgtttgaattggtaaaaggc
ctcattaaggatttggatggaactatggtagatgagctagatgaggaggatttcaaagaa
gaacaagactctgttgctcgccttatacacatgctttataataatgatccagaggaaatg
ttgaagattatatgtaccgtgaggaagcatataatggctggaggaccaaaacgcttacct
tttacaattcctcctctcatattttctgcactaaggctggtcagacagttgcaaggtcag
gatggagatatagtgggcgaagaactgcctccgacacctaggaagatttttcaactcgta
aatcagaccattgaggctctttcatctgttccatcgcctgagctcgcattaagattgtat
ttacaatgtgctgaggctgcaaataactgcgatcttgagccagttgcttatgaatttttc
actcaggcatttgtgttatatgaagaagaaattgcggactccaaggcccagctgactgca
atacatctaattattggtacacttcaaaggatgaatgtatttggtgttgagaacagggat
acattaacacacaaggccactggatattctgcaaagctgttgaagaaacctgatcagtgc
agagcagtttatgcctgttcacatctattttggatggatgatcagggtggcatcaaggat
ggagaaagggtcctgctctgcctgaggcgggcgttgaggattgcaaatgctgcccagcaa
atggccaatgttgcaagaggtagcagtggaccagttatactcttcgtagaaatattgaac
aagtacctatacttttttgagaaagggaacccacaggttactagtggtgcaattcagagc
ttaattgaattaataaatactgaaatgcaaagtgactctacaaccccagattcagctgca
aatgctttctttgctagcacagttaggtatattcagttccagaaacaaaaaggtggtatt
atgagtgagaaatacgatcccatcaaggtgtga
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