Ricinus communis (castor bean): 8275108
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Entry
8275108 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8275108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8275108
03012 Translation factors [BR:
rcu03012
]
8275108
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8275108
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8275108
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8275108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
ABC_tran
AAA_11
Dicer_dimer
T2SSE
NACHT
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
8275108
NCBI-ProteinID:
XP_002526307
LinkDB
All DBs
Position
4:22329044..22342732
Genome browser
AA seq
1209 aa
AA seq
DB search
MLSHFLFLNSPSRQIPFLTPHSKTLKPSLPLPSSLVIMKDRPPSSVYVPPHQRLRSVITK
PSYTSGSAASSVGDNLNHNHNRSAVLNGSPVPYFQQQQQQGNGFVDKNISNYKFISAYGD
GVFEEGSDREMESSTVLPGASLSDNIQEWKWKLTMLLRDKEKQELVSRDKKDRRDFDQIA
ALASGMGLYSQLYVKVVVFSKIPLPNYRFDLDDKRPQREVNLPLGLQKRVDAYLGEYLFQ
RSNTKERFPDFSSSRSSSNSSLATDEGLFEPTESLASSKAVMEKILQRRSLQLRDQQHAW
QESPEGRKILEFRKNLPAYKEKDAISTAISQNQVVIISGETGCGKTTQIPQFILESEIES
VRGAVCNIICTQPRRISAMSVSERIASERGEKLGECVGYKVRLEGIRGRDTHLLFCTTGI
LLRRLLVDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLLPHRPDLRLILMSATLDAELF
SSYFDGAPILRIPGFTYPVRTLYLEDILEMTGYRLTPYNQIDDYGQEKAWRSSKQAPRKR
KSQIASAVEEALRAADFKDYSPQTQESLSCWNPDCIGFNLIEYLLCNICENEMPGAVLVF
MTGWDDISSLKDKLQVHPILGDPSRVLLLTCHGSMASSEQRLIFDEPNDGARKIVLATNI
AETSITINDVIFVLDCGKAKESSYDALNNTPCLLPSWISKVSAQQRRGRAGRVQPGECYH
LYPRCVYDAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPELLAVQNAIEY
LKIIGALDQNENLTVLGKYLTMFPMQPKLGKMLILGAIFNCLDPVLTIVAGLSVRDPFLT
PMDKKDLAEAAKSQFSCDYSDHLALVRAYEGWKDAERNFAGYDYCWKNFLSMQSMKAIDS
LRKEFLSLLKDAGLVDGSITFCNTWSHEEHLIRAVICYGLYPGICSVVHNEKSFSLKTME
DGQVLLYSNSVNARESKIPYPWLVFNEKIKVNAVFLRDSTAVSDSVLLLFGGSISKGETD
GHLKMLGGYLEFFMKPIIAEMYQSLRRELDELIKTKLLNPRMDLHAYHDLLSAIRLLVSE
DPCDGRFIFGCQVLKPSKMSVTPTQGALASRTESGPGGDNSKSQLQTLITRAGYAAPTYK
TKQLKNSQFRSTVEFNGMQIMGQPCNNKKSAEKDAAAEALRWLMGETRTGPEYINHMSML
LKKSKKDHC
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgctctctcactttctctttcttaattcgccttctcggcagattccttttcttaccccc
cactccaaaaccctaaaaccctcactccccctcccctcctccctagtaataatgaaggac
cgaccaccttcctccgtctacgttcctccacaccaacggcttcgctccgtcattacgaag
cctagttatacctctggttccgctgcttcttcggttggcgataatcttaatcataatcat
aatcgaagtgccgttttaaatggctctcctgtaccttactttcaacaacagcagcaacaa
gggaacggttttgttgataagaatattagtaattataagttcatttctgcctacggtgat
ggagtctttgaggagggatccgatcgcgaaatggagtcctccactgttctacctggtgct
tccctttctgataacattcaggagtggaaatggaagttaaccatgcttttgcgagacaag
gagaaacaagaattggtctcaagggataaaaaggatagacgtgattttgatcaaatagca
gccttggcaagcggaatgggtttatatagccaactatatgtaaaagttgttgttttcagt
aagatcccattgccaaactatagatttgatttggatgataagcgtccgcagagagaggtg
aacctacctcttggtttgcaaaaaagagtggatgcttatcttggagaatacctctttcaa
agatccaacactaaggaaagatttccagatttttcctcttctagatcaagcagcaatagt
agtcttgctactgatgaagggctttttgagccaacagagtccctggcatccagtaaggct
gtcatggaaaaaattctgcagaggagaagtttgcaattgcgtgatcagcaacatgcttgg
caggagtccccagaaggcagaaaaatactggagtttcggaaaaatctacctgcttataaa
gagaaggatgcaatatcaacagccatttcacaaaatcaggtggttattatctcaggtgaa
actggttgtggcaagaccacacaaattccccagttcatattagaatctgagatagaatct
gtccgaggagctgtgtgtaatattatatgcacacagccaagacgaatatctgctatgtcg
gtttctgaaagaattgcttcagaaaggggagagaagttgggtgaatgtgttggatataaa
gttcggcttgaaggtataagaggaagagatacccaccttctcttttgcaccactggtatc
ttgttgagaaggctacttgttgatagaaatttaaagggcataactcatgttatcgtggat
gagattcacgaacgtggaatgaatgaagactttctgcttattgtccttaaggatctcctt
cctcatcggccagatcttaggctgattctgatgagtgcaacacttgacgcggagcttttc
tcatcctattttgatggagctccaatacttcgcattccaggttttacatacccagtgcga
actctttatctagaagatatcctggaaatgacaggttacagattaaccccatacaaccaa
attgatgactacggccaagaaaaggcgtggagatcaagtaaacaagctccaagaaagagg
aagagccagattgcttctgctgttgaggaggcactaagagctgctgatttcaaggattat
agtcctcagactcaggaatctctgtcgtgttggaatcctgattgcattgggtttaatctg
attgaatatctcttatgcaatatatgtgagaatgagatgcccggtgctgtcttagttttt
atgactggttgggatgacataagttccctgaaggataagctccaggttcatcctatttta
ggagatccaagccgagtcttgttgctcacctgccatggttctatggctagctcagagcag
agattaatatttgatgaacctaatgatggggcgaggaaaatagtgctagctactaatatt
gctgagacaagtatcacaattaatgacgttattttcgtacttgactgtgggaaggcgaag
gagtcttcatatgatgcactaaataacactccttgtctgctgccttcctggatttctaag
gtttctgctcaacaaagaagaggaagagctggccgtgttcaaccaggagaatgttaccat
ctctatcctagatgcgtttatgatgcttttgcagagtatcagttgccagaaatcttgagg
acgcctttgcagtctctttgtctacagattaaaagtttgaaacttggaagtatttctgaa
tttctctctagggctttgcagtcgcctgagttgttggcggttcaaaatgctatcgaatat
ttaaaaatcattggcgccttagatcagaatgaaaatttgactgttctaggaaaatatttg
actatgtttcccatgcaacctaaacttggaaagatgctcatactaggtgctatcttcaat
tgcctggatccagtattgacaattgttgctggccttagtgttagagatcctttcttgaca
ccaatggataagaaggatcttgcagaggccgcaaaatctcaattttcctgtgactatagt
gaccatcttgcccttgtcagggcgtatgagggctggaaagatgctgaaagaaattttgca
ggatatgactattgctggaaaaattttctttcgatgcaatcaatgaaagcgattgattct
cttcggaaggagttcttatccttgctcaaggatgctggcctggtcgatggcagcataacg
ttctgcaacacatggagtcatgaagagcatcttattcgtgcagttatttgttatggcctc
tatccaggaatttgctctgttgtgcataatgagaagtcattctctctgaaaactatggag
gacgggcaagtgcttctgtactcgaactcggtcaatgctcgggagtctaaaataccttat
ccatggctggtcttcaatgagaagataaaggtcaatgccgtttttcttcgggattcaaca
gctgtttctgattctgtgttgcttctctttggcggaagcatctccaagggggaaactgat
ggacatctgaagatgctgggaggatatctggaattcttcatgaaaccaattatagctgaa
atgtatcaaagtttgaggagggaacttgatgagctgattaagacaaaacttttgaatccc
agaatggatttgcatgcgtatcatgacctcctatctgccatacgtttactggtttcggag
gatccatgtgatggtagatttatatttggttgtcaagtcctcaagccgtcaaagatgtct
gttacaccaacacagggagccttagcttcaaggactgaaagtggccctggaggtgataat
tctaagagtcagctccagacattgataaccagggcaggatatgctgcaccaacatacaag
acaaagcagttgaagaacagccaatttcgatccactgtggagttcaacggaatgcaaatt
atggggcagccttgcaacaacaagaagagtgctgaaaaggatgcagcagctgaggccctc
cggtggctgatgggtgagacacggactggccctgagtatatcaatcatatgtcaatgttg
ttaaagaaaagtaagaaggatcattgctaa
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