Ricinus communis (castor bean): 8275266
Help
Entry
8275266 CDS
T01087
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8275266
Membrane trafficking [BR:
rcu04131
]
Protein recycling
Others
EARP complex
8275266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
8275266
NCBI-ProteinID:
XP_015577584
LinkDB
All DBs
Position
8:15178304..15193988
Genome browser
AA seq
1121 aa
AA seq
DB search
MQQPNNLFPSGTLFGNPFLLNGELSGGFESSRVFFLVPFLLFQGGDMDLSKVGEKILNSV
RSAKSIGLLPSASDRPEVPARAAAAAAVARVIAGLPPHQQFSLPSSSEELRSIYGSTPQG
RVAEELEEGYYEEDFDPIRHILEHIPSEENELEYFEKQAALRLAQLDRVAERLSHQVMEH
HEVMVKGMNLVRELEKDLKIANVICMNGRRHLTSSRNEVSRDLIVNSHSKKKQALLDMLP
ILSDLHHAWEMQTALESLVEDGNYCKAFQVLSEYLQLLDSFSDLSAIQEMSRGVEVWLGS
TLQKLDSLLLGVCQEFKEENYITVVDAYALIGDISGLAEKIQSFFMQEVLSETHSVLKNI
VQEDQETQMQNSRLTYSDLCLQIPESKFRQCLLRTLAVLFRLMCSYHEIMIFHIENKDWP
SQTLNMKLRDSDNSSDSGENQQSDPVTRISSDPERNNGSLSQSMGKMPTQEAITSMSSTD
HMGATDSNYSDSHYQVDEDRNDGTGASSSGSPWYQLRKDATVFVAQTLQRGRKNLWQLTT
SRVSVLLSSSAIGSMSIHQFLKNYEDLNVFILAGEAFCGVEAVEFRQKLKAVSENYFAAF
HRQNVYALKMVLEKENWLKLPPDTVQVISFAGLVGDGAPLIVPSDGNSKNVRLHHSDKSL
NSVDATLKKNGFTSWLQNGNPFSLKVVHTSKEGHSSPHNGGPSGDYDGQMNDGNLVSPQS
TDVSHMNGTPVSEDENEDLLADFIDEDSQLPSRISKPNHSRINSAHWKNDEITAQTGSSV
CLLRSMDKYARLMQKLEIVNVEFFKGICQLFEIFFYFVFETFGQQNPNSKGLSDSVNYRL
KTALSRISQDCDQWIKSHSTSFLPSPASLTTYMHADLTPTSPQNHLSATSFGLKERCTAA
DNISLVAQIMHRSKAHLQSMLLQNNPTIVEDFYAHLVNSVPDLKEHIHRTTARLLLHING
YVDRIANAKWEVRELGLEHNGYVDLLLGEFKHYKTRLAHGGIQKEVQDLLLEYGIEIVVE
TLTEGLSRVKRCTDEGRALMSLDLQVLINGLQHFVPVNVKPKLQIVETFIKAYYLPETEY
VHWARAHPEYTKNQIVGLINLVATMKGWKRKTRLEVLEKIE
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagcctaataatctattcccatccggcaccctttttggaaatccttttctgtta
aatggtgaattaagtggtggatttgaaagctctagggttttcttcttggtacctttttta
ttattccaaggaggtgatatggatttatcaaaagttggtgaaaagattttgaactctgtt
cgttccgctaaatcgattggtctcttgccttctgcttctgatcgtcccgaggttccagct
cgagctgcagcagctgctgctgttgcgcgtgttattgctggactgcctccgcatcagcaa
tttagtctaccatcaagttctgaagaattacgctcaatatatggaagcacaccacaaggt
cgagtggcggaggaactagaagagggttactatgaagaggattttgatccaattagacac
atattagagcatattccatctgaagaaaatgagttggaatattttgagaaacaggctgct
cttaggttggcacagttggatagagtagcagaacgtttatctcaccaagtcatggagcat
catgaagtgatggtgaaggggatgaatttggtcagggaattagagaaagacttaaagatt
gcaaatgtcatctgcatgaacggaagaaggcacttgacctcatctaggaacgaggtttca
agggatctcattgtaaattctcattccaaaaagaaacaagctctcctggacatgcttcca
atattatctgatcttcatcatgcatgggagatgcaaaccgcacttgaatccttggttgaa
gatggaaattactgcaaggcattccaagtcctatccgagtatttgcagttattagatagt
ttttcggatctttcggccattcaagagatgagtcgaggagttgaggtttggttgggaagc
acccttcaaaaactggattcactgctgttaggagtgtgccaggagttcaaggaggaaaat
tatataactgtggttgatgcttatgcattaattggagatatctcaggtcttgctgaaaag
atacaaagcttcttcatgcaggaagttctgtcagaaacgcactctgtattgaagaatatt
gtgcaagaggaccaggaaacacaaatgcagaatagcagacttacctacagtgatttgtgt
cttcagatccctgaatctaagttcaggcagtgtttgttgagaacactagctgtcttattc
aggttgatgtgttcctatcatgaaatcatgatatttcatattgagaacaaggattggccg
tcccaaacattgaatatgaagctaagggacagtgacaactcttcagattctggagagaac
cagcaaagtgatccagtcacaagaatttcttctgatcccgaaagaaataatggctctctg
tctcaatccatgggcaaaatgcctactcaagaagctatcaccagtatgtcttcgacggac
catatgggagctacagattcgaattattcagattctcattatcaagttgatgaggatagg
aatgatggtactggagcatcaagcagtggatcgccttggtatcagctgcggaaagatgct
acagtatttgtggcgcagacccttcaaaggggaaggaagaatctttggcagcttacgaca
agtcgagtatcagtattactttcttcttctgcaattggttcaatgagcattcatcaattt
ttaaaaaattatgaagatctgaatgtattcatcttggctggtgaagccttctgtggtgtt
gaagcagttgagttcaggcagaagttgaaggctgtctctgagaattattttgcagcattt
catcggcaaaatgtttatgcacttaaaatggttttggaaaaggaaaattggctgaaattg
ccaccagatacagtacaagtaattagctttgcagggcttgttggggatggggcacccttg
attgttccttctgatggtaactctaaaaatgtcagattgcatcattctgataagtcattg
aactcagttgatgctactttgaagaagaatggttttacaagttggctccaaaatggaaac
ccattttcactaaaggtagtgcacacttccaaagaaggccatagttccccacataatggg
ggtccttcaggtgactatgatggacaaatgaatgatggcaatctggtctctcctcaaagt
actgatgtcagtcatatgaacggaacccctgtttcggaagatgaaaatgaagatctactt
gcagacttcatcgatgaggatagtcaactcccaagtagaatttcaaagccaaatcattca
agaattaactctgcacattggaaaaatgatgagattactgctcaaacaggatcatctgtt
tgtcttttgagatcgatggataaatatgcaagactcatgcagaaactagaaatagtaaat
gttgagttttttaaggggatatgccagttgtttgagatttttttctactttgtatttgaa
acatttggtcagcaaaacccgaattcaaaaggtttatctgactctgtcaattatcgactg
aagacagccttgtccagaatatcacaggattgtgaccagtggataaaatcccattcaaca
tcgtttttgccttcacccgcatctttgactacatatatgcatgcagatttaacacctact
agtcctcagaatcacttatcagctacatcttttggtcttaaggaacgatgcacagctgca
gataatatatctcttgttgctcaaataatgcacagatccaaagcccatcttcagtcaatg
cttctccaaaataatccaactatagtggaggatttttatgcgcacctggtaaattctgtg
ccagatcttaaagagcacatacataggacaactgcaagattacttttacatattaacgga
tatgttgaccggattgctaatgctaaatgggaagtaagagagcttggactggagcataat
gggtatgttgatttgttgttgggagaatttaagcactataaaaccaggcttgctcatggg
ggaattcaaaaggaggttcaagacctccttttagagtatggcattgaaattgtggttgaa
actctcactgaaggtctatcacgggtcaagaggtgtactgatgaaggccgagctctcatg
tcattggatcttcaggtgttaatcaatggcctacaacattttgtccctgtaaatgtgaag
ccaaagttacaaatagttgaaactttcattaaggcttactaccttccagaaactgagtat
gtgcattgggcccgtgctcatccggaatacactaaaaatcaaattgttggattgatcaac
cttgttgctacaatgaaaggttggaagaggaaaaccaggttggaagtattagaaaagatt
gaatga
DBGET
integrated database retrieval system
