Ricinus communis (castor bean): 8276027
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Entry
8276027 CDS
T01087
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu00040
Pentose and glucuronate interconversions
rcu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
8276027
Enzymes [BR:
rcu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
8276027
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Motif
Other DBs
NCBI-GeneID:
8276027
NCBI-ProteinID:
XP_048229700
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Position
5:complement(29479702..29482354)
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AA seq
492 aa
AA seq
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MEVEKLVVIFVLAFASIIPILNADIGYYDEVWKKRAEEAKKNMMDAYVANPLEVTTEFNN
QTNEGKEKNGTVGSGKGEVNTTSSFSEAENTNDDNNEENEDDNDEWNETKGNFTKEFEKE
TNSTRRNLRQGKRLYKGPCHTTNPIDRCWRCRKNWAKNRKRLARCALGFGRRTTGGKAGK
FYVVTDNTDANVVDPKPGTLRHAVIQKAPLWIYFARDMNIKLQKELIINNDKTIDGRGAN
VHIAYGAGITIQFVKNVIIHGLHIHHISAASGGMIRDSIDHFGIRTNSDGDGISIFGSTN
VWIDHVSMSRCQDGLIDAIQGSTGITISNSHFTHHNDVILLGASDSFSGDQFMQVTVAFN
HFGQGLVQRMPRCRWGFFHVVNNDYTNWLLYAIGGSMHPTIISQGNRFIAPDNQYLKEVT
KRDYATEAEWKKWTWRSEGDLLMNGAFFVQSGDPKLKVKPSKKYLIKAKPGIYATRLTRF
AGALNCIPGRKC
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaaaagctagtggtgatctttgtcttggcttttgcctccatcattccaatc
ttgaatgcagatattgggtattatgatgaggtatggaagaaacgagctgaggaagctaag
aagaatatgatggatgcctatgtagccaaccctttagaagtcaccacggaattcaacaat
caaacaaatgagggcaaggaaaagaatggaactgtgggctctggtaagggagaagtcaat
actacaagctcttttagcgaagcagaaaacacaaatgatgataataatgaggaaaatgaa
gatgataatgatgagtggaatgagacaaagggaaacttcactaaggagtttgaaaaggaa
acgaatagcacaaggagaaacctgaggcaagggaagagactctacaaaggtccatgtcac
acaaccaacccgattgaccgatgctggaggtgcagaaagaactgggctaaaaacagaaaa
aggctagcaagatgtgcacttggcttcggtcggagaactaccggaggaaaagctggaaaa
ttctatgtagttactgataatacagatgccaacgtggtggatcctaaaccaggaacttta
cgccatgctgtgattcaaaaagcaccgttgtggatttattttgcccgcgacatgaacatc
aagttgcaaaaggagctaattattaataatgataagacaattgatgggcgtggagctaat
gtgcatattgcttatggtgctggtattactatacagtttgtcaaaaatgtcattattcat
ggactacatattcatcacatttcagctgctagcggtggcatgattagagactcaattgat
cattttggcatcaggactaacagtgatggtgatggtatttccatctttggttcaacaaat
gtttggattgatcatgtttctatgtctcgctgccaagatgggcttattgatgctattcaa
ggatccactggtatcaccatttcaaattctcacttcacccaccataatgatgtgatcttg
ttgggtgcaagtgatagtttctcaggtgatcaattcatgcaagtaacagttgcattcaat
catttcggtcaaggactagtgcaaagaatgccaagatgcaggtggggtttctttcatgtt
gttaacaatgactacaccaactggttactgtacgccattggtggcagcatgcatcctacc
attattagtcagggcaacagatttattgccccagacaatcaatatctcaaagaggtgacg
aaaagagattacgccacagaagctgaatggaagaagtggacatggagatcagagggtgat
ctactgatgaatggagcattttttgttcaatctggggatcctaaactgaaggtgaaacca
agcaagaagtaccttatcaaagctaagcctggaatttatgctactaggctgacacgtttt
gcgggggccctgaactgcattccaggcagaaaatgttag
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