Ricinus communis (castor bean): 8276468
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Entry
8276468 CDS
T01087
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X2
KO
K12816
pre-mRNA-processing factor 17
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8276468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8276468
Spliceosome [BR:
rcu03041
]
Complex C
Other components
Step II factors
8276468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_SPT8
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_DCAF4
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
PAN2_N
Motif
Other DBs
NCBI-GeneID:
8276468
NCBI-ProteinID:
XP_025014266
LinkDB
All DBs
Position
7:26923338..26926862
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AA seq
581 aa
AA seq
DB search
MDLLRTYRNDDESDEQEHQNPNSSPDSSPPRLLPSKSAAPKVDDTTLALAVAQANQILSK
PIDPVQHAVAYNPTYDQLWAPIQGPAHPYAKDGIAQGMRNHKLGFVEDAAIDSFVFDEQY
NTFHKYGYAADPSASEGNNYVGDLDALRNNNAISVYNIPQNEQKRQKVEKKIAAKADETE
DQVTDKEEIDNPATDVWLMRNRKSPWAGKKEGLQTELTEEQKKYAEEYAKKKEEKGGADK
GEVVADKTTFHGKEEKDYQGRSWIEPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFF
PKKGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIK
YWDTETGQVISTFSTGKIPYVVKLDPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQH
LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIAVHPNTNWFA
AQSMDNQILIYSTRERFQLNKKKTFKGHTVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW
KSTKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctacgaacatacagaaacgacgacgaatcagacgaacaagaacaccaaaac
cctaattcctcaccagattcgtctccaccccgtctccttccatccaaatccgccgcaccg
aaagtggacgacacaacactagctctagcagtagctcaagcgaatcaaatcctctcaaaa
ccaatcgaccccgttcagcacgccgttgcgtataacccaacctatgaccagctctgggct
ccaattcaaggccctgcacatccttacgcaaaagatggaattgcccaaggcatgcgtaat
cacaagcttggcttcgtggaagatgctgcaattgactcatttgtgtttgacgagcagtat
aatacttttcataagtatggttatgctgctgatccttctgcatctgaaggtaacaattat
gttggtgatttagatgctttacgcaataataatgctatttctgtttataatattccccaa
aatgagcaaaagagacaaaaagttgagaagaagatagcagcgaaagccgacgaaactgag
gatcaagttactgacaaggaagagattgataatccggcgactgatgtttggttaatgagg
aatcgaaagagtccatgggctggtaagaaggaaggtctgcaaacggaattgactgaggag
cagaagaagtacgcagaggagtatgcgaagaagaaagaagagaagggaggtgctgataaa
ggagaagttgttgctgacaagactacttttcatggtaaggaagagaaagattatcaaggg
agatcgtggattgaacctcctaaggatgctaaagccagcaatgatcattgttatatacca
aaacgacttgtgcatacttggagcggacatactaaaggtgtttctgctattaggtttttc
cccaagaaggggcatttaattctttcggctgggatggataccaaggtcaagatttgggat
gtgtttaattctggtaagtgtatgagaacttatatgggtcattcaaaggctgttagagat
atttcattttgcaatgatggaaccaagtttttgactgctggctatgataagaatattaag
tactgggataccgaaactggtcaggttatttccactttctccactgggaagattccttat
gttgttaaacttgatcccgatgatgataagcagaatatattgttggctggtatgagtgat
aagaaaattgttcaatgggatatgaatacagggcaaattactcaggagtatgatcagcat
ttgggggctgtaaatactattacatttgtcgataataataggaggtttgtaacttcaagt
gatgataaatcactccgtgtatgggaatttggaatccctgttgttataaaatatattagt
gaacctcacatgcattctatgccatctattgctgttcatcccaacactaattggtttgca
gcacagagtatggataaccagattcttatttacagtactagggaaagatttcagttgaat
aagaagaagacgtttaaaggacatactgtggcaggttatgcttgccaagtcaatttctca
ccagatggacggtttgttatgtcaggagatggtgagggtaagtgctggttttgggactgg
aagagcactaaagttttcaggacccttaaatgccatgagggtgtgtgcattgggtgtgag
tggcatccattggagcaaagtaaagtggcaacttgcggttgggatggcttgattaagtac
tggtga
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