Ricinus communis (castor bean): 8277504
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Entry
8277504 CDS
T01087
Name
(RefSeq) protein RDM16 isoform X1
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8277504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8277504
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
8277504
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Gene cluster
GFIT
Motif
Pfam:
Prp3_C
PRP3
Alpha-amylase_C_2
Motif
Other DBs
NCBI-GeneID:
8277504
NCBI-ProteinID:
XP_048236173
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Position
10:18892529..18897138
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AA seq
841 aa
AA seq
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MDRSSSKRSRDDRDHREREREHKHRSRDKDGEPDSHRHHHHHHHNHRSDREHHKSRREER
ESSRERELSKSERSYEPREQREREKSREREVRREIKEEEENEEVSRRKRKERDGEDNDNK
EAVSVVNESEKRARVSLSEQQEHKRERRRFGDKAKPQEEDDNYDIRIKEEVEQVNDNLAS
AGGGGDGTTAIGGIGTQNGPAQASFTKTSIMAENSMAYVYPLPTKVSSISNTNENKGVSV
TRSHEVPGKSSTDGTSSAAGKSGTLPLDALAKAKKALQMQKELAEKLKKIPQLSKGANSS
SDNKAPAVMKPQSYGIGVTQGSAPSKPVASVAVGALPSSSPANGVASVPGLASLPNIEAV
KRAQELAAKIGFRQDPEFPPLINLFPGQVPAEVSVPQKPTKAPVLRIDALGREIDEHGNI
VNLTKPSNLSTLKVNINKQKKDAFQLLKPELDVDPESNPHFDPRMGINKTKLLRPKRMTF
QFVEEGKWSKDAEIIKIKNQFGEESAKDKKARQALHAKANVAPDINPNLIEVSERVIIKE
KPKEPIPEIEWWDAPLLSGGTYNEIDDCNISDKLKMEKITIYIEHPRPIEPPAEPAPPPP
QPLKLTKKEQKKLRTQRRLAREKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTR
LEKEIRTAAAEREQAHIDRNIARKLTPTERREKKERKLFDDPNSVETIVSVYKINDLSHK
KTRFKVDVNAHENRLTGCAVISEGMNVVVVEGGSKSIKRYGKLMLRRINWAEAVEEEEEE
DDDIEEKPVNKCVLVWQGSVAKLSFNKFSVHECVTEAAARKVFADAGVAHYWDLSVNFSD
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggatcgatcctcctctaaacgctctcgcgacgaccgtgaccaccgtgagcgtgagcgt
gagcacaaacacaggtccagagataaagacggagagcccgattctcatcgtcaccaccac
caccaccaccacaaccacagatcggaccgtgagcaccacaagtcgaggcgtgaggagaga
gagagctctcgcgagcgtgaattatcgaagagcgaacgttcttatgaaccaagagaacag
cgagagagggagaagtcacgtgagagagaagtgaggagagagattaaggaggaggaggag
aatgaagaagtttctagaaggaagagaaaggagagagatggtgaagataatgataataag
gaggctgtttctgttgttaatgagagtgaaaaaagggctagggtttcattgtccgaacaa
caagaacataagagagagaggaggagatttggtgataaagcaaaaccacaagaagaagat
gataattatgatattaggattaaagaagaagtagaacaagttaatgataatttggcatct
gctggtggtggtggtgatggcactactgctattggtggcattggaactcagaatggtcct
gcccaggcatcattcactaagacaagcattatggctgagaactctatggcctatgtttat
cctcttcctaccaaggtatcttcaatttcaaacacaaatgaaaataagggagttagtgtt
accagatctcatgaggttcctggaaaatctagtacagatgggacatcgtcagctgctggg
aaaagtggaactctaccccttgatgctttagcaaaagctaaaaaagctttacaaatgcag
aaggaacttgcagagaaattgaagaagattccacaattgagcaagggtgctaactcaagt
tcagataataaagctccagctgtaatgaaaccgcagtcttatggtattggagttacacag
gggtcagctccatcaaaaccggttgctagtgttgcagtaggggcgttgccaagttcatca
cctgcaaatggcgtggcttctgttcctggacttgctagtttacccaatattgaagctgtt
aagcgtgctcaggagcttgctgctaaaattgggttccgtcaggaccctgagtttcctcct
cttataaacttgttccctggacaggtgccagcagaagtttctgtgccacagaagcctaca
aaggcccctgttcttcgtatagatgcacttggccgagaaatagatgaacatggaaatata
gtgaatctgactaagccaagcaaccttagcacactgaaggtgaatatcaacaagcagaaa
aaggatgcttttcagcttcttaaacctgaattagatgttgatcctgagtcaaatcctcac
ttcgatccaagaatgggtataaataagactaagcttttgaggcccaaacggatgactttc
cagtttgtagaggaaggaaaatggtcaaaggatgctgaaataataaaaattaagaaccaa
tttggagaagaaagtgcaaaagataagaaggcaagacaagcattacatgcaaaggcaaac
gtagctcctgatataaatcccaatctgatagaggtatcagagagagttataatcaaagaa
aagcccaaggaaccgattcctgaaattgagtggtgggatgcaccacttctgtctggtggt
acatataatgaaattgatgactgcaatataagtgataagctgaagatggagaagatcaca
atctatatagaacacccacgtcccattgaaccccctgctgagccagctccaccaccacct
cagcctctgaagctaacaaagaaggagcagaagaagcttcgtacacagcgtcgtttagcc
cgagaaaaagataggcaggagatgattaggcaaggcttgattgaacccccaaaacctaaa
gttaaaatgagcaatttaatgaaagttcttggctctgaagctacacaagatcctacaaga
cttgagaaagaaattcgtactgcagctgctgagcgtgaacaagctcatattgacaggaat
attgcacgcaaactcactcctactgaacgccgtgagaagaaggagaggaagctatttgat
gatccaaattctgtagaaactattgtctctgtctacaagatcaatgacctttcacacaag
aagacccgtttcaaagtggatgttaatgctcatgaaaaccgcttgaccggctgtgctgta
atttctgaaggaatgaatgttgtggttgtcgaaggaggaagtaaatccattaagaggtat
gggaagctaatgcttaggcgcataaactgggctgaggctgtggaagaagaagaagaagaa
gatgatgacattgaggaaaagcctgtgaacaaatgtgtcttggtctggcaaggaagtgtt
gccaaattgagcttcaataagttttctgtacatgagtgtgtgactgaagctgcagcccgg
aaagtgtttgctgatgccggtgttgctcactattgggatctttctgtcaacttctctgat
gattga
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