KEGG   Ricinus communis (castor bean): 8277599
Entry
8277599           CDS       T01087                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
rcu  Ricinus communis (castor bean)
Pathway
rcu03030  DNA replication
rcu03410  Base excision repair
rcu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rcu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8277599
   03410 Base excision repair
    8277599
   03420 Nucleotide excision repair
    8277599
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rcu03032]
    8277599
   03400 DNA repair and recombination proteins [BR:rcu03400]
    8277599
Enzymes [BR:rcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     8277599
DNA replication proteins [BR:rcu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    8277599
DNA repair and recombination proteins [BR:rcu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      8277599
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 8277599
NCBI-ProteinID: XP_002529065
UniProt: B9SSU6
LinkDB
Position
8:14317748..14337302
AA seq 2227 aa
MNGKDNRRRDRNNYNRSSKKQKLIRNAEEELDSKLGFDLFTEGDKRLGWLLTFASSSWED
EETRRVHSCVDLYFVSQDGSAFKSKFKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIE
IVEKEDLDLKNHLSGLRKRYLKISFSTVQQLMDVKKDLSHVVERNRAKFDTADAYESLLT
GRREQRPQDFLDCIVDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSSGVMLERRTDLLQR
AEVRICAFDIETTKLPLKFPDADYDLIMMISYMIDGQGFLIINRECVGEDIEDLEYTPKP
EFEGCVKVTNVKNEVELLKQWFAHMQEVKPGIYVTYNGDYFDWPFLESRAAYHGIKMSDE
VGFSCDKNQGECRARSACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMV
RFAKEKPQTMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLL
MVQAYKANVICPNKHQSEPEKFYKNHLLDSETYIGGHVECLESGVFRSDLPTHFKLDPSA
YDQLIGNLDRDLQYAIIVESKMDLDSVSNYDEVKNAIMEKLVMLRDEPVREECPLIYHLD
VAAMYPNIILTNRLQPPSIVTDEICTACDFNRPDKTCLRKLEWVWRGEIFMANKSDYYHL
KKQIESEFVDGIDGQLSKPFLDLPKVEQQSKLKERLKKYCQKAYKRVIDKPVTELREAGI
CMRENPFYVDTVRSFRDRRYEYKGLNKLWKGKLSEAKTSGNPIKIQEAQDMVVLYDSLQL
AHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWC
VLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNEQYQTLVDPLNKTYATHSEC
SIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQA
ELFDKFLHGSTLEGCYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLVDYG
QQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMK
FYLRKWCKTSTDIGIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHK
KVREKEDKFRQRKLVDIFRLSSKEDFVRKNNDTITDNCMMDEENVEDLEDFRNKSISTNG
PRPIVHCYATNSEEHSVKATGRMDSSHQQTDNGESVHELSSLVQQTASSGESIDRNVDYQ
GWLELKKRKWKDTLERRKRQRLGNLRNSSHANGDFEPLSSVINRKKAQSRTGVGSYFTTH
EIALTRCHWQIIQLFPGSHCGEFFAWVVVEGIMLKVPITVPRVFYLNSKAPITEKFPGRR
VNKTLPHGRHSYNLVEVIIDEDKFKKESKKLAALLADPEVEGIYETKVPLEFNAILQIGC
VCKVDKTAKKRNAQDRWSLNELQMKTTTECSYLEQSISFFYLYQSISEGRAVVVVYLPFL
RTVSVVVVNPYQNKDLSPSFLERQFREACIALSVEPPTPRNAIVFKVDYVGHVKDAERIL
QGTIREVRDKHHGPTLAVIECPNDHLMKSGIPALDNFPCVRIPSNARDSQYQVLGWQQAA
AKTAMQRSAASSQWLNERITLSRYAHVPLGNFELDWLIFTADVFISRALRDQQQLLWISD
DGVPDLGGISEESSCFADEVHQPILTYPGAYRKVSVELKIHHLAVNALLKSSQVNEMEGG
ALLGFDQDMSSGSHICEQYGVDEATSSAPALRVLKQLIQRCLADAVTSGSVFADALLQHL
YRWLCSPQSKLHDPALHRVLHKVMQKVFALLLAEFRKLGATIIFANFSKVIIDTGKFSLS
AAKAYCDSLLKTLQTRELFEWIELEPLQFWHSLLFMDQYNYGGIPARADDISHSESQGAH
SQRQESQVDIVSSWNIAEYLPKTIQDHFVLIVSEFMFIPWEYAQKQDANKASLQDVSSCT
PSITISAAETYESHIVEYLKGQISTYFTDKLLGIVRETVLHMKGINKSENDQPSSGFPQV
AGNIHKRVPALEFIKHVCAVLVLDLNVQHEVLVMRKNLLKYVRVREFAPEAEFHDPCPSF
VLPNVICSYCNDCRDLDLCRDTALLAQEWRCAVPQCGQPYDREGMENALLQIVRQRERLY
HLQDLVCIRCNQVKAAHLAEQCACAGAYRCKEDVSEFRSKMQIFLNVAISQKFQLLQECT
SWILEVH
NT seq 6684 nt   +upstreamnt  +downstreamnt
atgaacggcaaggataaccggagacgagaccggaacaattacaaccggagctcaaagaag
cagaagctgattcgaaatgctgaggaagagcttgactcaaagctcggtttcgacctcttc
actgaaggcgataaacgcctcggctggcttctcacttttgcatcctcatcttgggaggat
gaagaaacgcgaagagtgcatagttgcgttgatctctattttgtatctcaggatggttct
gctttcaagtctaagtttaagttccgtccttatttctatgctgccacaaaggagaaaatg
gaaatggatgttgaggcttatttgcgacgaagatatgaaagtcaaattgctgatattgag
attgtagagaaggaagaccttgatcttaaaaaccatttgtctggtttgcgtaaaagatat
ttgaaaatatctttctctaccgttcaacaattaatggatgtgaagaaagacctatcacat
gttgttgaaagaaaccgggcaaagtttgacactgctgatgcatacgagtctttattaaca
gggagaagagaacaaaggccccaagattttctagattgtatagtcgatcttcgtgagtat
gatgttccataccatgttcgttttgccattgataatgatattcgatgcgggcagtggtat
gatgttagtgtatccagtagtggcgttatgcttgaaaggaggactgatcttctgcaacgt
gctgaagttcgcatatgtgcatttgatattgaaacaaccaagctcccgctgaagtttcca
gatgctgattatgatttaataatgatgatatcttacatgattgatggacaggggttcttg
attattaacagagagtgtgtaggggaagatatagaggatctggagtatactccaaaacct
gaatttgaagggtgcgtcaaagtaaccaatgtgaaaaatgaggtagaacttcttaaacag
tggtttgcccacatgcaagaggtgaaacctggtatttatgttacatacaatggtgattat
tttgactggccatttctggaaagccgagcagcttatcatgggatcaagatgagtgatgag
gttggtttttcttgcgacaagaatcagggagagtgccgtgctagatctgcttgccatttg
gattgttttgcttgggtcaaacgtgatagttatcttcctcaagggagccatggccttaag
gctgttactaaggcaaaattgggttatgatccattggaggtcaatccagaagacatggtt
cggtttgctaaagaaaaacctcagacaatggcctcctattcagtttctgatgctgttgct
acttactatctgtatatgacctacgttcatccattcattttctctcttgcgactataatt
cccatgtcaccagatgaggttttacgcaaaggtagtggaacactttgtgaaatgcttctt
atggtgcaggcatataaggcaaatgttatctgccctaacaaacaccaatctgaacccgag
aagttctataagaaccaccttcttgacagcgagacatatattggtggccatgtggagtgc
cttgaaagtggtgtttttagatctgacctaccaactcattttaagcttgatccatcggca
tatgaccaactgatcggaaaccttgatcgagaccttcaatatgctataatagtagagagc
aagatggacttggattcagtctccaattatgatgaggtgaagaacgccatcatggaaaag
cttgtgatgttgagagatgaaccagttcgtgaagagtgccctctcatttatcatctagat
gtggctgctatgtatcccaacattattttgacaaacaggcttcagccgccctctatagtt
acagacgagatatgtactgcatgtgacttcaaccgtccagataaaacttgtctccgaaag
cttgaatgggtttggcgtggagaaatctttatggcaaacaaaagcgactattatcatttg
aagaagcaaattgagtctgagtttgtcgatggcattgatggtcagttgtcaaaaccattt
cttgacctccctaaggtggagcaacagtcaaagctcaaagagcgtctaaagaaatactgt
cagaaggcatataaacgggtaattgacaagcctgtcactgaactgcgggaagcaggtatc
tgcatgcgtgaaaatccattttatgttgacactgtccgcagctttcgggatagaagatat
gaatataaaggacttaataaactttggaaggggaagctgtcagaagccaagactagtgga
aatcccatcaagatccaggaagcacaggacatggttgtgctttatgattcactgcaactt
gcacacaagtgtatacttaattctttctatggatatgtcatgcgcaaaggtgcaagatgg
tactcgatggaaatggctggtgtagttacatatacaggagcaaaaattattcagaatgct
cggttgcttgttgaaaaaattggaaaaccacttgagttggacactgatggtatttggtgt
gttctcccaggatcttttccagagaactttacatttaaaacaaaggacttgaagaaaaaa
ttaacaatatcatatccctgtgtaatgcttaatgttgatgtagcaagaaacaatacaaat
gagcaataccagacacttgtagatcctttaaataagacatatgcaacgcatagtgaatgt
tcaattgaatttgaagttgatggcccatacaaggcaatgattcttcctgcttcgaaggaa
gaaggtattttgattaagaagcgttatgctgttttcaatgatgatggtacccttgctgag
cttaaaggttttgaaatcaagcgtagaggtgagctgaagctcatcaaagttttccaggct
gagctttttgacaagttcctccatggatcaactttagagggatgctattcagctgtagct
gctgtagccaaccggtggcttgatcttcttgataatcaagggaaggatattgctgacagt
gagttgcttgattatatatctgaatcaagcacaatgagcaagtccttggtagactatggt
caacaaaagtcatgtgcagtgaccaccgcaaggcgtctcgctgattttcttggtgatacc
atggttaaagataaaggattgcgttgtcaatatatagttgcatgtgaaccaaagggaaca
cctgtgagtgaacgtgctgttcctgttgcaatatttgaaactgatgctgaaataatgaaa
ttctatttaagaaaatggtgcaagacatcaacagatataggcattagatctatcattgac
tggtcctattacaagcaacgactaagttcagcaattcagaaaattattacaattcctgct
gcaatgcagaaggttgcaaaccctgtccctagggtagttcatccagattggcttcataaa
aaggtccgtgaaaaggaggataaatttcgtcagagaaaattggttgatatcttcaggtta
tccagcaaggaagattttgtaaggaagaataatgacaccatcactgacaattgtatgatg
gatgaggagaatgttgaggatttggaagacttccgaaacaaaagcatttctacaaatggg
cctagaccaattgttcattgttatgcaaccaatagtgaagaacattcagtcaaggcaact
gggagaatggattcctcacatcagcaaactgataatggtgaaagtgtacatgaactgtct
tcattggtgcaacaaactgcatcctctggagaatctattgacagaaatgtagattatcag
gggtggcttgaattaaagaagagaaagtggaaagatactctcgaaaggaggaagagacaa
aggttgggaaatctgaggaattcaagtcatgctaatggtgattttgagccattaagcagt
gtgataaatcgtaagaaagctcagagcagaactggtgttggttcatattttacaacacat
gaaatagccctaacacgatgccactggcagatcatccagctgtttccaggctcacattgt
ggcgaattttttgcttgggtggttgtggaaggaatcatgctcaaggttcctataacagtt
ccaagagtattttacctcaactccaaagcacctataacagaaaaatttcctggaagacgt
gtgaacaagacacttcctcatggaaggcacagctataacctagttgaggttatcatagat
gaagataaatttaaaaaagaaagcaaaaagctagcggctcttcttgcagatccagaagtt
gagggaatatatgaaacaaaggtgccattagagtttaacgccatacttcagattggttgt
gtctgcaaagtagataaaacagctaagaaacgtaatgctcaggatagatggagtctgaat
gaactgcaaatgaagacaacaacagaatgttcttatttggagcaatcaatctccttcttt
tacctgtatcagagcatctctgaaggacgtgctgttgttgttgtctacttgcctttttta
agaactgtctctgttgtggttgtcaatccttatcaaaataaggatttatcaccatctttt
cttgaaagacagttccgtgaagcttgcattgcattgtctgttgaaccaccaacacctagg
aatgctattgttttcaaagtggattatgttggacatgtcaaggatgctgagaggatttta
cagggaacaatacgagaagtcagagataaacaccatggacctacacttgctgtcattgaa
tgcccaaatgatcatttgatgaagtcaggcataccagctcttgataatttcccttgtgtg
aggataccttccaacgctcgtgacagtcagtatcaggtccttgggtggcaacaagcggct
gcaaaaactgcaatgcaacgttctgctgcatcatctcagtggttgaatgaaaggattact
ctctcaagatatgcccacgtacctttgggaaattttgaacttgactggcttatatttacg
gcagatgttttcatctccagagcattacgagatcagcaacagttgctttggatatctgat
gacggtgttcctgatctaggagggattagtgaagaatcttcatgttttgcagatgaggtc
catcaacctatcctcacataccctggagcatataggaaagtttctgtggaattgaagatt
catcacctggctgtaaatgctctgctgaaaagcagccaagtgaatgaaatggaaggaggt
gccttattaggatttgaccaggacatgagttctggttcacacatttgtgaacaatatggc
gttgatgaggctacctcatctgcacctgcattgcgtgtcctgaaacagctgatccagagg
tgtcttgcagatgcagttacatcgggaagtgtgttcgctgatgcactattgcaacatctt
tatcgatggctgtgcagccctcaatcaaagcttcatgacccagctcttcaccgtgtactc
cacaaggtcatgcaaaaggtgtttgctttgcttttggctgaatttcgcaagttaggtgcc
acaatcatttttgcaaatttttcaaaagttatcatagacacaggaaagttcagtctatct
gcagcaaaagcttactgtgatagcttgctcaaaactttgcaaactagagaactatttgaa
tggattgagcttgagccattgcagttttggcattccttgcttttcatggatcagtataac
tatggtggaattccagctagagctgatgatatttcacacagtgaatctcaaggggcgcat
tcccagagacaagagtcacaagtggatattgtatcaagctggaatattgctgaatactta
cccaagacaattcaggaccattttgtcttgattgtctcagaatttatgtttattccctgg
gaatatgcacaaaagcaagatgcaaacaaagcatctttgcaggatgtcagctcttgtact
ccctcaatcaccatatcagctgctgagacatatgaatcacacatagtggaatatcttaaa
gggcagatcagcacttacttcacagacaaactcctaggaattgttcgtgaaactgttctt
catatgaaggggattaataagtctgaaaatgatcaaccatcatctggtttcccacaagtt
gctggtaacattcataaaagggttcccgcattggaatttattaagcatgtctgtgctgtt
ctggtccttgacctcaacgtgcagcatgaagttctggtgatgagaaagaatctattaaaa
tatgtaagagtgcgggagttcgctcctgaagctgagtttcatgatccctgcccttcattc
gtcttgccaaatgtaatttgcagctactgcaatgattgcagagatctagatttgtgtcgt
gacacagctctactggctcaagagtggcgctgtgctgtcccacagtgtggccagccttat
gaccgggagggaatggagaatgctcttcttcaaattgtacggcagagggaacgtctatat
catctgcaggatctagtgtgcattaggtgcaaccaggtcaaagccgcacatctggcagaa
cagtgtgcatgtgcaggagcatatcgatgcaaggaagatgtgtctgaatttcgctccaaa
atgcagattttcttaaatgttgccatttctcagaagtttcaactccttcaagagtgtact
tcatggatattagaagtgcactag

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