Ricinus communis (castor bean): 8277820
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Entry
8277820 CDS
T01087
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8277820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8277820
03012 Translation factors [BR:
rcu03012
]
8277820
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8277820
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8277820
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8277820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_C
AAA_22
HA2_N
Ank_2
Ank_5
nSTAND3
ResIII
Ank
AAA_19
ATPase
AAA_7
AAA_16
Rad17
T2SSE
ABC_tran
NACHT
AAA_23
Motif
Other DBs
NCBI-GeneID:
8277820
NCBI-ProteinID:
XP_048229618
LinkDB
All DBs
Position
5:complement(14740324..14752103)
Genome browser
AA seq
1224 aa
AA seq
DB search
MGKKRQKKAEQGNPNVAEATRIRISQILEQFRAAKDQVFTFEANLSNRERAVVHEVCKKL
GMKSKSTGXVLFDIXVHSLFQNERSKYMNYXYYTGGLKLVLQELFAYYPPEDGELGAKMV
GNCKAKDSIIQGKKDGIFSMPSMAKADITKKVESLNSRIEKDANLRQIVEQRSKLPIASF
RDVITSTVESHQIVLISGETGCGKTTQVPQYLLEYKWGKCEACKIICTQPRRISAISVAE
RISSERGENVGDDIGYKIRLESKGGKNSSIVLCTNGVLLRLLVSRGTRRSKKKSSKNAKD
DISNITHIIVDEIHERDRYSDFILAIIRDILPSYPHLRLILMSATLDSERFSQYFGGCPI
VRVPGFTYPVKSFYLEDVLSILNSADNNHIDSAMPSIPIKSHELREEDRAAVDEAINLAW
TNDEFDTLLDLVSSEGIPEVYNFQESSTGLSPLMVFAGKGRVDDVCMLLSFNADCHLQDK
DGLTALEWAKRENQHETAEVLKRHVEVSPTDCREQQQLLDNYLGKINPELVDVSLIERLL
RKICISSRDGAILVFLPGWDDIRRTREGLLANPFFKDSSKFLIISLHSMVPSMEQKKVFK
RPPQGCRKIILSTNIAETSITIDDVIYVIDSGRMKEKSYDPYNNVSTLQSSWVSKASSKQ
REGRAGRCQPGMCYHLYSKLRAASMPDFQVPEIRRMPIEELCLQVKLLDPNCKIEEFLGK
MLDPPVPETIRNAILVLQDIGALSPDEQLTEVGEKLGCLPVHPLISKMLFFAILMNCLDP
ALTMACASDYRDPFTLPVLPNEKKRAAAAKFELASLYGGRSDQLAVIAAYECWKNAKERG
QEARFCSQYFISSSTMIMLHGMRKQLLSELIRNGFIQEDASCCNVNSHDPGILYAVLVAG
LYPMVGRVLPPRNGKRFIVETATGAKVRLHPQSLNFKLLSNKTDDCSLIIFDEITRGEWG
MNIRNCTIVGPLALLLLATEIVVTPAKDHDEEDNEGDDNNDGSDTAPEDEGDEDKMEIDD
RLGGHNDEKIMSSPDNSVNVVVDRWLYFSSTALEVAQIYCLRERLSAAILFRVMHPKQEL
PPALAASMRATACVLSYDGQSGISLPQESVDSLASMVDATEIDSTAPGRRKAMGHNPSGF
LRSLMSNRRQQTTPHHYRNARLPAFKGKSNINQPSTCKNTPPVSSLDKIPDQRPPLQGHT
SGKSGSSPRGDSSKRQRGNASKNQ
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagagacaaaagaaagcagaacaaggaaaccctaacgttgctgaagctact
cgtatacgaatttctcaaatacttgaacaattccgtgctgctaaagatcaagtattcaca
tttgaagctaacttgtcaaaccgtgaacgtgctgtggtacatgaagtatgcaagaaattg
ggtatgaaatccaagagtactgggtaagttttgtttgatatataggtccattctttattt
cagaatgagagatctaaatatatgaattattaatattatacaggcggattaaaacttgtc
ttgcaagagttatttgcatactacccacctgaggatggagagcttggtgcaaaaatggtg
ggaaattgtaaggcaaaggatagtataatacagggaaagaaagatggtatctttagtatg
ccttcaatggccaaagcagatattactaagaaggttgaatcactaaattctagaattgaa
aaggacgcaaacttaagacagattgttgaacaaagatctaagcttccaattgcatccttt
agggatgtcattacatccacagtagaatctcaccagattgttcttatttctggtgaaact
ggatgtggaaagactacacaggttccacaatatctcttggagtataagtggggaaaatgt
gaggcttgtaaaataatctgcacgcaacctcgtcgtatatcggcaatatcagttgctgag
agaatctcgtctgaaagaggagaaaatgttggagatgatattggatacaagattcgatta
gaaagtaaaggtgggaaaaactcatcaattgtcttatgcacaaatggggttctactgcga
ttactagtttcgaggggcactagaagatcgaagaagaagtcttcaaaaaatgcgaaggat
gatatttcaaatataactcacattattgtggatgaaattcatgaaagggaccgctactca
gacttcatcttagcaattatcagagacatacttccttcatatcctcatcttcgactgata
ttgatgagtgctactcttgattctgaacgattttcacaatattttggtggctgcccaatt
gtccgtgttcctgggttcacatatcctgtcaaaagtttctacttggaagatgtactttca
atcctaaattctgcagataataatcatattgattctgctatgccaagtatcccaattaaa
agccatgagctaagagaagaagacagagctgctgtagatgaagctatcaatttagcttgg
acaaatgatgaatttgatacccttttggatttggtttcttctgaaggaatcccagaggtt
tacaatttccaagagtcatcgactggcctatcgccattaatggtctttgctggaaagggt
agagtagatgatgtttgcatgcttctctcgtttaatgcggactgtcatttacaagacaag
gatggactgacagcactagaatgggccaaaagagaaaaccagcatgaaactgctgaagta
ttaaaaagacatgttgaagtttctccaactgactgccgggagcagcaacaattacttgat
aattatctaggaaaaattaaccctgaacttgttgatgtttctcttatagagcggttgtta
aggaaaatttgtatttcttcaagagatggtgctatcctcgttttccttcctgggtgggat
gatataaggaggacccgggaaggattacttgcaaatccatttttcaaagattcttctaag
ttcttgataatctctcttcattctatggttccgtctatggagcaaaagaaagttttcaaa
cgcccacctcaaggttgccgcaaaattattctttcaactaatatcgctgaaacttccatt
accattgacgatgttatctatgtaattgatagtggtcgaatgaaagaaaaaagttatgac
ccttataacaatgtatcaactcttcaatcttcctgggtatccaaagcaagttcaaagcag
cgtgagggacgtgctggtcgctgtcagcctgggatgtgttatcatctttattcaaaactt
cgagcagcttctatgccagatttccaagttcctgaaatcaggagaatgccaattgaagaa
ctttgtttgcaggtgaagttgcttgatcccaattgcaagatagaagaattcctagggaag
atgcttgaccctcctgttcctgaaaccatacggaatgctattcttgttcttcaggatatt
ggggctctatcgccggatgaacaattgacagaagtaggagagaagctgggctgcctgcct
gttcatccattgataagcaagatgcttttctttgctatattgatgaattgcctagaccca
gctttgacaatggcttgtgcctctgactatagagatccatttacccttcctgttttgcca
aatgaaaagaagagagctgctgctgctaaatttgagctagcgtcactgtatggtgggcgc
agtgatcagctagcagttatagcagcctatgagtgctggaagaatgctaaagaaagaggt
caagaagcacggttttgttctcaatactttatctcttcaagcaccatgattatgctgcat
ggtatgcgtaagcagcttctatcagaactaattcggaatggattcattcaggaagatgcc
tcatgttgtaatgtgaattcacatgatccgggaatactctatgctgtacttgttgctggt
ttgtatcctatggtggggagagtccttccacctagaaatggaaaacgttttattgtagag
actgcaactggtgccaaagttaggttgcatcctcaatcccttaattttaagctgttatct
aacaaaactgatgactgctctttgattatttttgatgaaataacccgcggagaatggggt
atgaacataaggaactgtactattgttggcccacttgcattactactgcttgcaacagag
attgtagttacccctgcaaaggatcacgatgaggaagataacgagggtgatgataataat
gatggaagtgatactgcacctgaggatgaaggcgatgaagataagatggaaattgatgat
aggttgggtggacacaatgatgagaagatcatgtcatctcctgataattcggttaatgta
gttgtggatcgatggctttatttttcatcaacagcccttgaagttgctcagatttactgt
ttgagagagcgattatcagcagctattttattcagagtaatgcatcctaagcaggagctt
cctcctgcccttgcggcctcgatgcgagcgacagcttgtgttctgtcttatgatggacaa
tccgggatctcattacctcaagaatctgtggactctttggcatcaatggtcgatgcaact
gagattgacagcactgctcctgggagaagaaaagcgatgggccataaccctagtggtttt
cttagatcactgatgagcaataggcgacagcagaccactcctcaccattatcgcaatgct
aggttacctgcattcaagggaaaatcaaacataaatcaaccatcaacctgtaagaataca
cctccagtaagttcattagacaagatccctgatcaaaggcctccattgcaaggtcacact
tcaggtaaatctggatcaagtccaaggggggattcttctaaacggcagcgtggaaatgca
tccaaaaaccaatga
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