Ricinus communis (castor bean): 8277850
Help
Entry
8277850 CDS
T01087
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X2
KO
K15172
transcription elongation factor SPT5
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8277850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8277850
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8277850
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
8277850
RNA polymerase I system
8277850
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
8277850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOWx_SPT5
Spt5_N
KOW5_SPT5
GPKOW_C
ProQ_C
DUF4438
KOW6_SPT5
Motif
Other DBs
NCBI-GeneID:
8277850
NCBI-ProteinID:
XP_015579054
LinkDB
All DBs
Position
2:8020062..8029647
Genome browser
AA seq
1043 aa
AA seq
DB search
MARGRADDDDEGYEDEEYEEVMEDEEDEEIEEEEVRGGSNRKRRRSDFIDDVAEEDDEEE
EEEYDEDDDDYGGGGAGKRQKAKASSGKQFFDLEAEVDSDEEEEEDDDAEDDFIVDNGAD
LPDEDDGRRVHRRPLLPREDDQEDMEALERRIQARYARSSHTEYDEETTEVEQQALLPSV
RDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYIEADKEAHVRE
ACKGLRNIYAQKIMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNV
RQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNVDEARELHIRVERRRDPMSG
DYFENIGGMLFKDGFLYKTVSMKSISVQNIKPTFDELEKFRKPGENDGDIVGLSTLFANR
KKGHFVKGDAVIIVKGDLKNLKGWVEKVDEENVHIKPEMKDLPRTIAVNEKELCKYFEPG
NHVKVVSGTQEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTKIGDYE
LHDLVLLDNMSFGVIIRVESEAFQVLKGVPERPEVALVRLREIKCKIEKKFNVQDRYKNT
IAVKDVVRIIDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSHSCIVVGGTRANG
DRNGDSYSRFSSFKTPPRVPQSPRRFPRGGPPFESGGRNRGGRGGHDALVGTTVKIRLGP
FKGYRGRVVEIKGPSVRVELESQMKVILVDRNNISDNVVISTPHRDSSRYGMGSETPMHP
SRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPASWGTSPHY
QPGSPPSRAYEAPTPGSGWANTPGGSYSDAGTPRDSSSAYANAPSPYLPSTPGGQPMTPS
SAAYLPGTPGGQPMTPGTGGLDVMSPVIGGDNEGPWYMPDILVNVRKAADDSAIGVIRDV
LADGSCRVVLGANGNGETITALPNEIEIVVPRKSDKIKIMGGAHRGATGKLIGVDGTDGI
VKVDDTLDVKILDMVILAKLAQP
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtggcagagccgacgacgacgacgagggatatgaagatgaagaatacgaagag
gtgatggaggacgaagaagatgaagagattgaagaagaagaagtaagaggaggatcgaat
aggaagagaaggagatcagattttatagatgatgttgccgaggaagatgatgaggaagaa
gaggaggaatacgatgaagatgacgatgattatggtggtggtggtgctggaaagagacag
aaagcaaaggcaagctcggggaagcaattctttgatttggaagctgaggttgatagcgat
gaagaagaagaagaagatgatgatgctgaggatgattttattgtcgataatggagctgat
ctacctgatgaagatgatggtagaagggttcatcgtaggccattgctccctcgggaggac
gatcaagaagatatggaagctctagagagaagaattcaagcaaggtatgcaaggtcaagt
cacacagaatatgatgaagagactacagaagtggagcaacaagctcttctgccatctgtt
cgggatcccaaattgtggatggtgaaatgtgcgattggccgtgaacgagaaacggctgta
tgccttatgcaaaaatatattgataaaggatctgagttgcaaatccgttctgctattgct
cttgatcatcttaagaattatatttatattgaagcagataaggaggcccatgttagggag
gcttgtaaaggtctgcgcaatatatacgcccagaaaataatgcttgtcccaatcaaagaa
atgactgatgttctttcagttgaaagcaaggcaatagatctttcaagggatacctgggtc
agaatgaagattggaacatacaaaggggaccttgctaaagtagtagatgtagataatgtc
cgacagagagttacagtgaagttaattccaaggatcgatctgcaggctcttgcaaataaa
ctggagggcagagaagttgcaaaaaagaaggcttttgtcccccctccacggtttatgaac
gtagatgaagcaagggaactacatattcgtgtagagcgaagaagggatcctatgagcggt
gattattttgaaaatattggtggaatgttgtttaaagatggattcttgtataaaactgtg
tcaatgaaatcaattagtgttcagaacatcaaaccaacttttgatgaacttgagaagttc
cgaaagcctggtgagaatgatggtgatatcgtcggtttgtcaaccttatttgcaaacaga
aagaagggccattttgtgaaaggtgatgcagttattattgtcaaaggagatttgaaaaac
cttaagggatgggttgagaaagttgatgaagagaatgttcatatcaaacctgaaatgaag
gaccttcctagaactattgcagtgaatgaaaaggagctttgcaagtacttcgaaccgggt
aatcacgtgaaggttgtctctggtacccaggagggtgcaactggtatggttgttaaggtc
gagcaacatgtgctcatcattctgtctgatacaaccaaggaacacattcgtgtttttgcc
gatgatgttgtggaaagctctgaggtaaccaccggcgttacaaaaattggagattatgag
cttcatgatctggtgctattggataatatgagctttggtgtaataatacgtgtggaaagc
gaagcctttcaggttcttaagggagttccagaaagacctgaggttgctcttgttagattg
agagagatcaaatgcaagattgagaagaaatttaatgtgcaagatcggtacaagaatact
atagcagtgaaggatgttgttagaataattgatggcccttgcaaagggaaacaaggtcct
gtagaacacatatacaaaggagtattgttcatttatgatcggcatcatcttgaacatgct
ggatttatttgtgctaaatcgcattcttgtattgttgtgggaggaacacgagccaatggc
gatagaaatggtgattcctactcgagatttagcagttttaaaactccccctcgggtaccc
caatcaccaaggagatttccaagaggtggtcctccatttgagtctggaggaaggaatcgt
ggtggaagaggagggcacgatgctctggtcggtacaacggtgaagatacgtctgggtcct
ttcaaaggttatcgtggacgggttgtagagatcaaaggcccatctgttcgagttgagttg
gagtctcagatgaaggttattttagttgatcgcaataatatttctgacaatgtggttata
tctactccacaccgggattcatctcggtatggtatgggaagtgaaactcccatgcatcct
tctcggactccactgcacccatatatgacaccaatgagagatgctggagcgacacccatt
catgatgggatgaggacccctatgcgtgaccgagcatggaatccttatgcgccgatgagt
cctcccagggataactgggaagatggaaatccagcgtcttggggaacaagtccacattat
cagccaggaagccctccttctcgggcatatgaagctccaactcctggatcaggctgggct
aacactcctggtggtagttatagtgatgcaggaacaccaagggatagcagttctgcttat
gccaatgctccaagtccgtacttgccatcgactcctggtgggcagcctatgactccaagc
tctgcagcctaccttcctggaactcctggagggcagccaatgacgcctgggactggtggt
cttgatgtcatgtcccctgtaataggaggggacaatgaaggaccatggtacatgccagat
atattggttaatgtacgaaaggctgcagatgactctgctattggtgttatcagggatgtg
cttgcggatgggtcctgtagagtagtccttggggcaaatggcaatggtgaaacaatcaca
gctcttcccaatgaaattgaaatagtggtaccgagaaaatcagataagatcaagatcatg
ggtggagcgcatcgcggtgccacgggtaagttaattggtgttgatggcacagatggaatt
gtaaaagtagatgacacacttgatgttaagatattagacatggttatactggcaaaactg
gctcaaccatga
DBGET
integrated database retrieval system
