Ricinus communis (castor bean): 8278245
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Entry
8278245 CDS
T01087
Name
(RefSeq) autophagy-related protein 16 isoform X2
KO
K17890
autophagy-related protein 16-1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
8278245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rcu04131
]
8278245
03029 Mitochondrial biogenesis [BR:
rcu03029
]
8278245
Membrane trafficking [BR:
rcu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
8278245
Others
Specific organelles associated proteins
Auto phagosome
8278245
Mitochondrial biogenesis [BR:
rcu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
8278245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ATG16
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_WDR19_1st
eIF2A
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_EIPR1
WDR54
Ge1_WD40
Cytochrom_D1
Beta-prop_VPS8
Beta-prop_NUP159_NUP214
Beta-prop_Nup120_160
Beta-prop_RIG_1st
Beta-prop_Vps41
PEP5_VPS11_N
LAMB4
Fez1
V_ATPase_I
Cnn_1N
Motif
Other DBs
NCBI-GeneID:
8278245
NCBI-ProteinID:
XP_002511279
LinkDB
All DBs
Position
4:27365784..27369570
Genome browser
AA seq
516 aa
AA seq
DB search
MYREEVARKAIKHALKALRKRHLLEEGAHAPAIIALSRPIISQGSEWKEKAEALELELQQ
CYKAQSRLSEQLVVEVAETRASKASLQEKETVIADLEKELTQIREECSQLKEDLEEKFKA
LELVMSENDSLRVQYDALQMRLDEMTAKANSAEAENKMLVDRWMLQKMQDAERLNEANAL
YEEMVDRLRASGLEKLAQQQVDGVVRQSEEGAEFFMESTIPSACKHKITAHDGGCASILY
EYNSGKLISGGQDRAIKMWDTTTGSLSRTLYGCLGSVLDLSITHDNRSIIAASSSNNLYV
WDVSSGRARHTLTGHVDKVCAVDVSKISSRYVVSAAYDRTIKVWDLQKGYCTNTIVFPSN
CNAICFSMDGQTICSGHVDGNLRLWDIQTGKRVGEVAAHSLAVTSISLSRNGNVVLTSGR
DNVHNLFDMRSLEVCGTFRATGNRVASNWSRSCISPDDNYVAAGSADGSVHIWSVAKADI
VSTLKEHTSSVLCCSWSGLGKPLATADKNGIIYTWT
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgagaggaggttgcgaggaaggcaataaagcacgccttaaaggcgctaaggaag
cggcatttgctcgaagaaggcgctcatgctcctgctattattgccctttccaggcccatt
atctctcagggctcagaatggaaagagaaagcagaagctttggaactggaacttcaacaa
tgttacaaagctcaatctcggttatcggagcaactagttgtggaggtagctgagacaaga
gcatcaaaagcttcactgcaagaaaaagaaactgttatcgctgatttggaaaaggagttg
actcaaataagggaggagtgctctcagttaaaggaagatttagaagaaaaatttaaagct
ttagaattggttatgagtgagaatgattcacttcgagtgcaatatgatgcacttcaaatg
cgattggatgagatgactgccaaagctaatagcgccgaagctgaaaataagatgttagtt
gatcgttggatgctccaaaagatgcaagacgctgaacgtcttaatgaggctaatgcactg
tatgaagaaatggttgatcgactcagggcaagtggcttagagaaacttgctcagcagcaa
gtggatggcgtggtgcggcaaagtgaagaaggtgcagagttctttatggagtcgaccatt
ccatcagcatgcaaacacaaaattactgctcatgacggtgggtgtgcttctatattgtac
gagtataactctggcaaattgattagtggtggacaggatcgtgcaatcaaaatgtgggat
acaactactggatcattaagccgtaccctttatggttgtcttggctctgttcttgatctt
tctatcacgcatgacaatagatctatcattgcagctagcagctcaaacaatttgtatgta
tgggatgtaagttcagggcgtgcccgtcacactctcactggccatgttgataaagtgtgt
gctgtagatgtcagcaaaatttcaagtcgttatgttgtcagtgctgcttatgatcgtact
ataaaagtgtgggatttgcaaaaaggttactgcaccaacacgattgttttccccagcaac
tgcaatgctatttgcttcagcatggacggacagaccatttgttcgggccatgttgatggg
aatcttcgtctgtgggatattcaaacaggcaagcgagtcggtgaagttgctgcacattca
cttgctgttacatccatatctttatctcgaaatggaaatgttgtgttgacgagtggaaga
gataacgtgcacaatttatttgacatgagatctttggaagtttgtggcacatttagagca
actgggaatagagtggcatctaactggagtcgctcttgtatcagtcctgacgataactat
gttgctgctggatcagctgatggatcagtacacatctggtcagtagctaaagctgatatt
gtgagcaccctgaaggaacacacttcttctgtactttgttgttcttggagtggacttggc
aaaccattagccaccgctgataagaatggaattatttatacctggacctga
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