Ricinus communis (castor bean): 8278485
Help
Entry
8278485 CDS
T01087
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X3
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8278485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8278485
03036 Chromosome and associated proteins [BR:
rcu03036
]
8278485
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8278485
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
8278485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
8278485
NCBI-ProteinID:
XP_015574477
LinkDB
All DBs
Position
5:27282145..27289506
Genome browser
AA seq
1050 aa
AA seq
DB search
MFGSNPFGQSSSSPFGQSSTSPFGQSSSSAFGSQSVFGQTNNGTNNPFAPKPFGTTTPFG
SQTGGSIFGGTSTGMFGAPQTSSPFSSGATFGASSSPSFGGSVPAFGASSSPSFGSSSSF
GGSSVFGQKPAFGAFGSATQTSPFGSTSQQSQPAFGSGLFGSTTPFGTSSQPAFGAASNP
GFGSTSAPAFGASSAPSFGANSTLGFGANSTPSFGFTSTPTFGSTASAFGVSSSPVFGSG
AGFGSSSAPVFGTSGSSGFGASSPAFGTNSSAPGFGVSTSAPAFGSTTTPSFGSAPAFGT
SATPSFSFASSPSFGQSTSAFANSPFGTSSPFGTQATTPTFGNTGFGQPAFAGNRGGSRV
VPYTATAETDSSSGQPGKLESISAMSVYKDKSHEELRWEDYQSGDKGGPVAPGQSSSGIN
FATSTAQSNPFAPSNTFAQTSASPFSSSVSSNPFSSKPFGPTSNPTFPSPFNTSSNPFQS
TSAFASTSSSAFTSSVAPSPFGTTSSSAFTSTPSLFNSSIGQTNSSPFGNFTSTQSSLSF
PSSTPAFTQTSSPFGQVTTSFTPSTASSFTQSSMFSTPSTGFGFSSSTSLMPSTNQGVFP
QPSLSQSVPFQLSQPSQPGALNFSNFGQSQAAGTSGFAGSSSIYGQSMFGPLSTTQSSVA
VQPAPVTNPFGTLPAMPQMSIGRAGTTPSVQYGISSLPVVDKPAPVRISSLLTSRHLSQR
RIRLPARKYNPKHDGPKVPFFCDEEETTGRPKADALFIPRENPRALVIRPTEQWPLRSSA
EKAPPLKDASTPVYENGKILEAVDVPSSSGSSAKDKNMSEDGLSKERVHLKLNQKPNGVH
EDNSVQKEELYMTLSGHRAGEAAIVYEHGADIEALMPKLRRSDYYTEPRIQELAAKERAE
PGFCRHVKDFVVGRHGYGSIKFLGETDVRRLDLESLVQFNNREVIVYTDDSKKPPVGQGL
NKPAEVTLLNIKCFDKKTGRQYTEGAKIEKYKEMLKRKAEEQGAEFVSYDPVKGEWKFRV
NHFSKYGMGEEEEEEEEEEEDWIVLSARDC
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttctaacccttttgggcagtcatctagtagcccttttgggcagtcttctact
agcccttttgggcagtcatctagtagcgcttttgggtcccaatcggtcttcggccagaca
aataatggaaccaataatccttttgctccaaaaccatttggtactacaaccccttttggt
tcacaaacagggggttccatctttggaggcacttcaactggaatgtttggtgctcctcaa
acttcctcaccattctcttccggagcaacctttggtgcttcgtcttccccatcttttgga
gggtcagttcctgcattcggagcttcttcttcaccttcttttggcagttcatcgtcattt
ggtggttcttccgtttttggccagaagcctgcttttggagcctttggctctgctactcaa
actagtccatttggaagtacaagtcagcaatcacagcctgcatttggtagtggcttgttt
ggttctacaacaccttttggtacatcaagtcagcctgcttttggtgctgctagtaatcct
ggatttggttcgacaagtgcccctgcttttggtgctagtagtgctccttcctttggtgca
aacagcactttgggttttggtgctaacagcactccgtcctttggttttacaagtaccccg
acatttggctcaacagcatcagcatttggagtgtccagcagcccggtatttggatctggg
gctggctttggatcttcaagcgcacctgtttttggaacatcaggctcctctggttttggt
gcttccagtcctgcttttggtactaattcaagcgctcctggatttggtgtgtctactagt
gctcctgcctttgggtctacgactactccttcctttggaagtgcccctgcttttgggact
tcagctaccccatcctttagcttcgcatcaagtccatcttttggccaatcaacttctgca
tttgcaaatagtccatttggaaccagttctccatttggaacccaagctacaacaccaaca
tttgggaacactggttttgggcagccagcatttgcagggaatcgtgggggaagtagagta
gtgccctacactgcaacagctgaaacagacagcagcagtggtcagcctggaaaattggag
tctatatcagccatgtctgtgtacaaagataaaagccatgaagaactgaggtgggaagat
tatcaatccggagataaaggtggaccagtcgctcctggtcaatcctccagcgggattaac
tttgctacatctactgcacagtcgaatccttttgctccatcaaacacatttgcacagaca
tctgctagtcccttttcttcttcagtttcttccaatccgttttcttcaaagccttttgga
cctacaagtaatcctacatttccttcaccttttaacacttcatccaacccttttcagtca
acctcagcttttgcatcgacatcatcttctgcatttacatccagtgtagccccatcacct
tttgggacaactagttcatctgcttttacttcaacaccatccttgtttaattctagcata
gggcagacaaattcttcaccttttggaaattttacaagtactcaatcatctctctcattc
ccatcctccacacctgcctttacacagacaagttctccatttggacaagtgaccacttct
tttacaccgagtactgcctcttcttttacccagtcaagcatgttcagtactccttccact
ggttttggattctcaagctctacatctctgatgccttcaactaaccaaggggtgtttccc
caaccatctttgtctcagtctgtgccttttcaattgtctcaaccttctcagcctggtgct
cttaacttcagcaatttcggtcagtcacaagcagctggtacaagtggttttgctggttca
tcaagtatttatggtcagtccatgtttggaccattatctaccacacagagttctgttgct
gttcagccagcacctgttacaaatccatttgggacactccctgcaatgcctcaaatgtct
attggtcgagctggaactacaccttccgttcaatatgggatctctagcttgcctgttgtt
gataaacctgctcctgttagaatatcatccttgttgacttctaggcacttgtcacaaagg
cggatcaggttaccagcaaggaaatataatcctaagcatgatggtccaaaggttccattt
ttctgtgatgaagaagaaacaactggcagaccaaaggcagatgctctatttattcctcgg
gaaaacccaagggctctggtcattcgtccaacagagcagtggcccttgagatccagtgca
gaaaaagctcctccattgaaggatgcatctactcctgtgtatgagaatggcaaaatttta
gaagctgtggatgttccttcttcaagtggttctagtgctaaagataagaatatgagtgaa
gatggccttagtaaggagcgagtgcatttgaaactcaaccagaaacctaatggagttcac
gaggataattctgttcagaaagaggagttgtatatgacgcttagcggtcacagagctggt
gaagctgcaattgtttatgagcatggggctgacattgaggcactaatgccaaaactacgg
agatctgactactacacagagccgcgaatccaagaattggctgccaaggaaagggctgaa
ccagggttctgccgccatgttaaggactttgtggttggacgtcatggttatggcagcatt
aagtttttgggtgagacagatgtgcgccggcttgatctagagtcccttgtgcagtttaac
aaccgggaggtgatagtatacacagatgacagcaagaagccacctgttggacagggtctc
aacaaacctgcagaggtaacacttcttaacatcaaatgctttgacaaaaagactgggcgg
cagtataccgaaggcgcaaaaattgagaaatacaaggagatgctgaaaagaaaggctgag
gagcaaggtgccgaatttgtgtcgtacgatcctgtaaaaggagaatggaagttcagggtc
aaccatttcagcaagtacggtatgggggaagaagaagaagaagaagaagaagaagaagaa
gactggattgtgctatctgccagagattgctaa
DBGET
integrated database retrieval system
