Ricinus communis (castor bean): 8278788
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Entry
8278788 CDS
T01087
Name
(RefSeq) WD repeat-containing protein 43 isoform X1
KO
K14546
U3 small nucleolar RNA-associated protein 5
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
8278788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcu03009
]
8278788
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
8278788
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_1st
Utp12
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
Beta-prop_ACSF4
WDR90_beta-prop_4th
ANAPC4_WD40
EIF3I
CFAP251_N
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_VPS8
WD40_MABP1-WDR62_2nd
EMC1_C
Beta-prop_CAF1B_HIR1
PQQ_2
TP_0598_N
Motif
Other DBs
NCBI-GeneID:
8278788
NCBI-ProteinID:
XP_015573254
LinkDB
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Position
9:complement(1457718..1464832)
Genome browser
AA seq
619 aa
AA seq
DB search
MVSSNIRDILTAFSPSLDYFAISSGDGRVKIWDTVKGQLQTEFADITSSNNADFYTKPER
GHLSIDYTCMKWLSLDRKRKRKLGSSLLVLGTGSGDVLALDVSAGQLKWTVSDCHPGGVS
AISFSTSDSCIYTAGADGMCCKLDPQTGNMLGKFRASTKAISSVSVSPDGKILATAAAQL
KTINLSDNKKIQKFSGHPGAVRAMIFTEDGKYILSSAVGERYIALWRTDGVKKQTASCVL
AMEHPAVFLDSKCLENKGVDDAGLCVMAISETGVCYTWCGQNVEELRIAKPTKIVLFSED
SKNQKGGLRTIFAAKLQGTAKPMAAHVFIACGLLVKPLFQKIVVHSGTDMNLDISQDGIL
LPMNRPILKSKKGIDVQNRVTALDRANVEDASLPISKVSDFHEKRMRDKTVNIETDEVMV
GLMDARSQPESVEDRDGILEVDAVTTSMEKQLRLLEILSSKGDSMILGSIDLEANVPQKK
MRAAVLSMEPSNASKLLEVLVAKWQSRSCSGKYVLPWMYCILVNHGHHIMAQDKPETQML
NSLLEITKSRGVAIQPLLQLSGRLQLVTAQTDKAALNKNNVLLRNQQINDSEDDEEDEIE
EQFYGEEDDESQLSSDDDS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggtgtcatcaaatataagggacattttgacagcatttagtccttcattggactatttt
gcaatcagctccggagacggtcgagtcaagatttgggacacagtgaaaggccagctgcaa
actgagtttgcagacatcacatcatcaaataatgctgatttttatacgaaacctgaaaga
ggtcacctttcaattgattatacatgcatgaaatggttgtccctagacagaaagaggaaa
cggaagctaggaagctcattgttggttttaggaacaggaagtggggatgttttggcactc
gatgtgtctgctggtcaattgaaatggacagtctctgattgtcatcctgggggtgttagt
gctatttcattttctacaagtgattcatgcatttacactgcgggtgctgatggaatgtgt
tgcaaacttgatccgcaaacaggaaatatgttggggaagtttagagcttccacaaaggct
atatcctctgtatctgtttcaccagatgggaagatattagcaactgcagctgcccagttg
aagactatcaatctttctgataacaaaaagatacagaagttttctggtcatcccggagct
gttcgtgctatgatctttactgaggatggaaagtatattctctcatctgctgttggtgaa
aggtacatcgcattatggagaactgatggtgtcaaaaagcagacagcaagctgtgtcctt
gcaatggagcaccctgctgtatttcttgatagcaagtgccttgagaataagggagttgat
gatgcagggctatgtgttatggccatttcagaaactggtgtttgttatacatggtgtgga
caaaatgtcgaagagttacgtattgccaagcctacaaaaattgtactatttagtgaagat
tcaaaaaatcaaaagggtggattacgaactatatttgctgcaaaattacaaggcactgcc
aaacctatggctgcacatgtgtttattgcctgtggtttgctggttaaacctttgtttcag
aaaatagtagtgcattctggcacagacatgaatttggatatctctcaggatggaattctt
ctaccaatgaaccggcctattctcaaatctaagaaagggatagatgtacagaatcgagtc
actgcattagaccgtgccaatgtggaggatgcatcacttcctatttcaaaagtttctgat
tttcatgagaaaaggatgagggataaaactgttaatattgagactgatgaagtcatggtg
ggcttgatggatgcgaggagccaacctgagtctgtggaggacagagatggcattttagaa
gttgatgctgtaacaacttctatggagaagcagttaaggttactagaaatacttagcagt
aaaggtgatagtatgatacttggcagtattgatcttgaagctaatgttccacaaaagaag
atgagggcagctgttttgtctatggaacctagcaatgcatccaagttactggaagttttg
gtggccaaatggcaatctaggtcatgtagtggaaagtatgttctgccatggatgtattgt
atattggtcaatcatggacatcatattatggcccaagacaaaccagagactcagatgctt
aattccttattggagatcactaaatctaggggcgtggctattcaacctttattacaatta
tcaggtcgtttgcagcttgtaactgcacagactgacaaggctgccctgaacaaaaataat
gtcttgttgcgtaatcaacaaattaatgatagtgaagatgatgaagaagatgaaatcgag
gagcaattttatggggaagaagacgacgaatcccaattgagtagtgatgatgatagttag
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