Ricinus communis (castor bean): 8278854
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Entry
8278854 CDS
T01087
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3 isoform X2
KO
K14829
pre-rRNA-processing protein IPI3
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcu03009
]
8278854
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
8278854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
NBCH_WD40
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_IP5PC_F
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_VPS8
Beta-prop_SCAP
Beta-prop_LRRK2
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR19_1st
PEP5_VPS11_N
WD_LRWD1
Beta-prop_NUP159_NUP214
WDR54
VPS11_N
VPS8_N
Beta-prop_NWD2_C
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
8278854
NCBI-ProteinID:
XP_002510201
UniProt:
B9R7A8
LinkDB
All DBs
Position
2:complement(3292641..3296529)
Genome browser
AA seq
452 aa
AA seq
DB search
MEEELLLASSSIDGGIGCWDLQTGAEHLRYKSCASPPHGLTCVGSRFLAASQLRDSHASS
GSIVYWSWSKPQVEVKCFPEEPIKPLVANKEGTYIIGGGISGHIYIWEVATGRLLKKWRA
HYRAVTCLVFTEDDSFLVSGSEDGSVRVWSLLMMFDEYQTEQASQLYEHSFSEHTLRVTD
VVTGYGGGNAIIVSASDDRTCKVWSLSKGNLLRNIVFPSIIDSLALDPGENVFYAGCRDG
NIYIAALNADSSSTKSHWLHIIGSLSSHSKPVTCLAYSANGNLLLAGSEDGIIRVWDPRS
HNIVRTFKHAKGPVNNIQIVKRPHYLNPRASSIVQASSRRHGSSLPPPLDKYVNSTDKSI
GSTAVVRLQDTCNNPLDVSYVSYQVIANQIKELQQQGSAAAAEMEVERLKLDCAQYMQML
QKWKKMYDNLHQLCVNELLEGDNVIKNNQNII
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaattactacttgcatcgtcctcaattgacggcggcatcggttgctgggac
ctccaaacaggcgccgagcacctccgctataaatcatgcgcctctcccccccacggactt
acctgcgtaggttctcgcttccttgccgcttctcagctgcgcgactctcacgcatcgtca
ggctccattgtttactggtcctggtcaaagcctcaagttgaggtaaagtgcttccctgaa
gagcctataaaaccgcttgttgctaataaagaaggcacttatattattggcggaggaata
tccgggcatatctacatttgggaggttgcaactggtagattgcttaagaaatggcgtgct
cattacagggctgtcacgtgtttagtttttaccgaggatgattcttttctggtttctggt
tcagaggatggttctgttagagtttggtcacttctcatgatgtttgatgagtatcaaacg
gagcaggctagccagctctatgagcacagcttttcagagcatactttacgtgtaactgat
gtagtcacaggttatggaggaggcaacgcaattattgtttcagcttctgacgatcgaact
tgtaaggtgtggagcttgtccaaggggaatttattgagaaacattgtatttccctcaata
attgattcacttgctttagaccctggtgaaaatgtcttctatgctggctgtagagatggc
aacatatacattgctgcactcaatgctgacagttcctctaccaaaagtcattggttgcat
ataattggttcattatctagtcacagtaagcctgttacttgcttagcatatagtgcaaat
ggaaatttattgctggctggatcagaggatggcattattcgagtttgggatcctagaagc
cataatattgttcggacctttaaacatgcaaaaggtcctgtgaacaacattcaaattgtt
aaacggccacattacctaaatcctcgtgcatcatctattgtgcaagcttcctcaagaagg
cacggatcatctttacctccaccgctggacaaatatgtcaattcaacagacaaaagtata
ggatctacggcagtcgttagactccaggatacatgtaacaatcctctggatgtttcatat
gtcagctatcaagtgattgctaatcagatcaaagagctacagcaacaaggttctgctgct
gcagctgaaatggaagtggagagactaaagctagattgcgcacagtatatgcaaatgctt
cagaaatggaaaaaaatgtatgacaacttgcaccaattgtgcgtaaatgagttattggag
ggggataatgtgataaagaacaatcaaaatataatctga
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