Ricinus communis (castor bean): 8279030
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Entry
8279030 CDS
T01087
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8279030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8279030
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8279030
mRNA degradation factors
5'-3' decay
Lsm complex
8279030
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
8279030
NCBI-ProteinID:
XP_002532727
UniProt:
B9T3A8
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Position
8:complement(6802628..6806544)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSAAEIRRAQKAERDATDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggcccggaagatatctatctttctacttctcttgctagctatcttgat
aagaagctacttgtgctactgcgagatggtcggaagctcatgggaatacttcgttctttt
gaccaatttgctaatgccgttcttgagggtgcatgtgaaagagttattgttggtgacctc
tattgcgatatccctttaggtctatacattattcgaggcgagaatgttgttttaattgga
gagctggatttggagaaagaggaacttcctccacatatgactcgtgtttcagcagcggaa
attagacgggcgcaaaaagccgaaagggatgctacggatctaaaaggtacaatgaggaag
agaatggaattccttgatttggactag
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