Ricinus communis (castor bean): 8279389
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Entry
8279389 CDS
T01087
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8279389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8279389
03036 Chromosome and associated proteins [BR:
rcu03036
]
8279389
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
8279389
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
8279389
PBAF complex
8279389
GBAF(ncBAF) complex
8279389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
NPR3
ZZ
Motif
Other DBs
NCBI-GeneID:
8279389
NCBI-ProteinID:
XP_048226832
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All DBs
Position
2:7293690..7300674
Genome browser
AA seq
788 aa
AA seq
DB search
MPASPSFPSSDGRGKWKRRKREPQNTRKHQQQPAKREEPDDEDEDAAVEDDNNHNNNNNE
DDSEDPNPNPNPNSNHNPTQPDHETEVVIDGGVRICDFPCVTKLLVNRPHASVSAIVALE
RANSGGESSSSKGQVVPHLENMSYGQLQAVSAVPPEAFGCDQDDGNSAGYVVTPPVILEG
KGVVKRFGSRIHVVPMHSDWFSPATVNRLERQVVPHFFSGKSPDHTPEKYMECRNYIVAK
YMGNPERRIAVSDCQGFVVGIENEDLTRIVRFLDQWGIINYCAAPSSRESWSGGSYLRED
PNGEVHVPSAALKSIDSLIKFDKPRCSLKAAEIYSSLSYHDDFSDLDSRIRERLSENHCT
YCSQSLPSVYYQSQKEIDILLCSDCFHEGRFVTSHSSLDFIKMDPTKDYGDLDGESWSDQ
ETLLLLEAMEIYNDNWNEIAEHVGSKSKSQCILHFLRLPMEDGLLENIEVPSISKSPNPS
SRDDNGRLHSRSNGSCVQDADSESRIPFANSGNPVMALVAFLASAVGPRVAAACAHASLA
ALSEDHRMNSERLHGREGSFQGEVANSVQQKEDKPNSSWAQNEAEGAPLSTEKVKAAAKA
GLSAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMRECEQVEKTR
QRFAAERARILSTRIGPAGATSQMSLAGVTPSMGNNNIGSSRQQVMPTSSSQPSISGYGN
NQQVHPHMSFMQRGQPQPMFPVGPRLPLAAIQPSSSAPSNIMYNASGNSQPSLNQMLRSV
SGPSSGLG
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccccttctttcccttcttcagatggcaggggcaaatggaaaaggcgaaaa
cgggaacctcaaaatactcgcaaacaccaacaacaaccagctaaacgcgaagaacccgac
gacgaagacgaagacgccgccgtcgaggacgacaataatcacaataacaacaacaatgaa
gatgattctgaagatcctaaccctaaccctaaccctaattctaaccataatcccactcaa
cccgatcacgagactgaggttgttatagatggtggggtccgcatatgcgatttcccttgt
gtaacaaagcttcttgtgaatcggccccatgcttctgtttcagcaattgtggctttagaa
agagcgaattcaggtggagagagcagcagcagtaaagggcaggtggtgcctcatttggag
aatatgtcttatggacagctacaggcggtttctgctgttccacctgaggcttttggctgc
gatcaagatgatgggaattctgctggctacgtggttacacctccagtgattttggaggga
aaaggtgttgttaaacgctttggcagtagaattcacgttgttcctatgcattcagattgg
ttttcaccagccactgtaaatagattggagagacaagtggtgccgcattttttctctgga
aaatcacctgatcatacgcctgagaaatacatggaatgtagaaactatattgttgctaaa
tacatggggaatccagagaggaggatcgcagtttctgattgtcagggatttgtagttggt
attgaaaatgaagatttaactcgaattgttaggtttcttgatcaatggggaatcatcaac
tactgtgcagccccatcaagtcgtgaatcttggagtggtgggtcgtacttaagggaggac
ccaaatggtgaggttcatgttccatcagctgctttaaagtcaattgacagtttgatcaaa
tttgacaagcccagatgtagcctcaaggcagctgaaatttattcatcattgtcatatcat
gatgatttctctgacttggacagcagaatccgagagcgtttatctgaaaatcattgcact
tactgttctcagtctcttcccagtgtatattatcagtcacaaaaggagattgatatacta
ctatgctctgactgctttcacgaggggaggtttgtgaccagtcattcaagcttagatttt
ataaagatggatcccaccaaggattacggtgatttagacggagaaagttggagtgatcag
gaaacactactgctgcttgaggcaatggaaatttacaatgataattggaatgaaattgca
gaacatgttggatcaaagtcaaaatcacaatgcatccttcattttcttcgtctacccatg
gaagatggcctcttggaaaatattgaagttccaagcatttccaagtcacctaatccatca
agcagagatgataatggaagactacattcacgttcaaatggatcctgcgtccaagatgct
gattctgaaagccggatcccttttgcgaattcagggaatccagtgatggcattggttgcc
tttctggcctctgctgttgggccaagagttgctgcagcttgtgcccatgcatccttggca
gcattgtcagaggatcataggatgaattcagaaagactacatggtagagaaggaagtttt
cagggagaagttgcaaattcagttcaacaaaaagaagacaaacccaatagttcctgggct
cagaacgaggcagagggtgcccctttatctacagagaaagtcaaagctgctgcgaaagct
ggtctttctgcagcagcaactaaggctaaactgtttgcagatcatgaagagagagaaatt
caaagactatctgctaatatcattaatcaccagttgaagagattggagttgaagctgaag
cagtttgcagaggtggagacctttctaatgagagagtgtgaacaagtggagaagacgagg
cagaggtttgctgctgagcgtgcccgcattctgtctacccggattggacctgctggggct
acttcacaaatgagtttggcaggtgttactccttccatgggtaataataacattggcagc
agtaggcaacaagtcatgcctacctcatcttcacaaccaagcatttcaggatatggcaac
aatcaacaagtccatccccacatgtcatttatgcaacggggacaaccgcaaccaatgttt
ccggtgggcccgagactgcccctagcagctatacaaccatcatcatctgctccatcaaat
atcatgtacaacgcctctggaaattcacagcccagtctcaatcaaatgctgagatctgta
tcagggcctagctctggtttgggttga
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