Ricinus communis (castor bean): 8279501
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Entry
8279501 CDS
T01087
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03020
RNA polymerase
rcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
8279501
09124 Replication and repair
03420 Nucleotide excision repair
8279501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8279501
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8279501
Enzymes [BR:
rcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
8279501
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
8279501
DNA repair and recombination proteins [BR:
rcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
8279501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
8279501
NCBI-ProteinID:
XP_002519060
UniProt:
B9RZ91
LinkDB
All DBs
Position
5:12715422..12724679
Genome browser
AA seq
1194 aa
AA seq
DB search
MEDDQEYDQNLNEDYEDEDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEI
VDESADIEIRPESQHNPGHQSDFAETIYKISFGQIYLSKPMMTESDGETATLFPKAARLR
NLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLT
ELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRP
PSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFS
DTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTKEKRIKYAKEILQKEMLPHVGV
GEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTR
DVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLT
YASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITV
GSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRV
DVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWH
DLVAKGFIEYIDTEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASI
IPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFR
QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFG
RPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDH
SISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQE
DMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISK
ALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQ
PAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKN
SFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatcaggaatacgatcaaaatctaaacgaggactacgaagacgaagacgaa
gatgagataactcaggaggacgcatgggccgtcatttcggcttatttcgaggagaaaggt
ctggtgcgacaacagcttgattcgttcgacgagtttattcaaaatacgatgcaggaaatc
gtcgacgaatctgctgatatcgagattcgaccggagagccagcataatcccggccaccag
tccgattttgccgagactatctataaaataagctttggtcagatatacttgagcaagccc
atgatgaccgagtctgacggtgaaactgcaactttatttcctaaagctgcaaggttgagg
aacctaacatactcagctcccttgtatgttgatgtgacaaagagggtaataaagaaagga
catgatggtgaagaagtcaccgaaactcaggattttaccaaagttttcattgggaaggtt
cctataatgcttcggtcaagttattgcacattgtaccagaattcagagaaagatcttaca
gaacttggggagtgtccttacgatcagggtgggtattttattatcaatggaagtgagaag
gttctaattgcccaggagaagatgagcaccaatcatgtttatgtgttcaagaagaggcag
ccaaataaatatgcgtatgtggcagaagttcggtctatggcagagtcgcagaatcggcca
cccagtaccatgtttgtgcggatgctttcccggactagtgccaagggggggtcttcaggg
cagtacattcgcgctactcttccctatattcgaactgaaattccaattattattgtgttt
cgggcccttggttttgttgctgacaaagatatattagagcatatatgttatgatttctct
gatactcaaatgatggagttgctacggccttctttggaagaagcatttgtgattcaaaat
caacaggttgcactggactacattgggaagcgtggagcaactgttggtgtaaccaaggaa
aaaaggattaagtatgctaaagagatccttcagaaggaaatgcttcctcatgttggtgtt
ggagaatattgcgagaccaaaaaggcttattatttcggatatatcattcatcgacttctc
ctctgtgcgcttggccggagagcagaagatgacagggatcattatggcaacaagaggctc
gaccttgctggtccattacttggtggactttttagaatgttattcagaaagttgaccagg
gatgtcaggtcttacgtgcaaaagtgtgtagataatgggaaggatgttaatctgcagttt
gccattaaagcaaaaaccattactagtggtcttaaatactctcttgccactggaaactgg
ggacaagcaaatgcagctggtacaagagctggagtgtcacaggtgttaaatcgtttgacg
tatgcttctaccttgtcacacttgcgaagattaaattctccaattgggcgtgaagggaaa
ttggctaaacccaggcagttgcataattcgcaatggggaatgatgtgtccagctgagaca
cccgaaggacaagcttgtggactggtgaagaatcttgcgttaatggtttacataacggtt
ggatcggctgcatatcctatcttggaatttttggaagaatggggaactgagaattttgag
gaaatatctcctgcagttattcctcaagctacaaaaatttttgttaatggttgctgggtg
ggtatccatcgcgatcctgatatgttggtcaagacattgagacggctaaggagaagggtt
gatgtcaatactgaagttggggttgttagagatatccgtttgaaagagctgagaatttac
accgactatggtcgttgcagtcgtccattatttattgttgagaaacaaaggcttctcatc
aagaaaaaggacattcatgccctgcagcagagggagtcctcagaagagggtggctggcat
gatcttgtagcaaaaggatttattgaatatattgacactgaggaagaagaaactactatg
atatcaatgaccattcatgatcttgtacaagcacggatcaatccagaagaagcttattct
gatacttacacccattgtgaaatccacccgtcattgattttaggtgtttgtgcttcaatt
attccttttcctgatcataaccagtccccgcgtaatacgtaccaatctgctatgggaaag
caagccatgggaatatatgtcacaaactatcaatttcgaatggatacattggcttatgtt
ctttattaccctcaaaaaccacttgttacaacaagagctatggagcatcttcactttagg
cagctaccagctggcattaatgctattgttgccattgcctgctattctggatacaaccaa
gaagattctgtcatcatgaaccaatcatcaattgaccggggattcttcagatcacttttc
ttccgttcatatagggatgaggagaaaaagatggggactcttgtcaaagaagattttggg
cgtccagatagagctaatacaatgggcatgcggcatggctcctatgataaattggatgat
gatggtcttgcacctccagggacaagagtttcaggtgaggatgtaatcattggaaagacc
actcctattgctcaggaggaagcgcagggacaatctgcacgttacacaaggcgagatcat
agcataagcttacggcatagtgaaacagggattgtggatcaagttcttctgacaacaaat
gctgatgggctgaggtttgttaaagtaagggtaaggtctgttcggatacctcagattgga
gacaagtttagcagtaggcatggtcaaaagggaacagtaggtatgacttacacgcaggaa
gatatgccttggaccgtggaaggcatcacgcctgatatcatcgtcaatccacatgctatt
ccttctcgaatgactattggtcagcttattgaatgtattatggggaaggttgcagcacac
atgggaaaggaaggggatgcaactccattcactgatgttactgtggataacattagcaag
gctcttcataaatgtgggtatcaaatgcgtggttttgagacgatgtacaatggtcacact
ggtcgaaggcttacagctatgatattccttggccccacttattaccaaaggctgaagcac
atggttgatgacaagatccactctcggggaaggggccctgtgcaaatcctgactaggcaa
cctgctgaaggaaggtcacgtgatggtggcctccgctttggggaaatggaacgagattgc
atgattgcacatggtgctgcacactttctcaaagagaggctgtttgaccagagtgatgcc
tatagggtccatgtttgtgagcgatgtggattgatagctattgcgaatctcaagaaaaat
tcttttgaatgcagaggttgcaagaataagaccgacattgttcaggtacacattccttat
gcctgtaagctactcttccaagagctcatggccatggccatagcaccaagaatgcttaca
aaagatgtgaaaccaaccaaagaccagaagaaaaagggagcataa
DBGET
integrated database retrieval system
