Ricinus communis (castor bean): 8279764
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Entry
8279764 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8279764
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8279764
03012 Translation factors [BR:
rcu03012
]
8279764
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8279764
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8279764
Translation factors [BR:
rcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
8279764
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
nSTAND3
AAA_16
ATPase
T2SSE
AAA_30
Dicer_dimer
PhoH
Motif
Other DBs
NCBI-GeneID:
8279764
NCBI-ProteinID:
XP_015575469
LinkDB
All DBs
Position
8:complement(26278333..26292247)
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AA seq
1195 aa
AA seq
DB search
MSCYSSIFQGSIRTSTIMSLRTSFPLHLHKTPYKTLIKQHSLFSLASISTMMNHQTLSFK
HHQGVVRCSGSLGFLDWRTVALPYFCLQNLNYSRFAYQGVTSDDSDLEVGSYSQQAMSGS
TLDNIEDWRWKFTMLLRNKDGQEIVSREKKDRRDFGHLSELASRMGLHSRQYSRVVVFSK
IPQPNYRPDLDDKRPQREVTLPFGLQREVDAHLNAYLSKKSTNRENFSVNFLPKSSNGKS
MANTEGVYEQPDPMIKNNVVMERILRRKSLQLQTKQQEWQETPEGQKMAEFRQSLPAYKE
RDALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGGACSIICTQPRRISAMAV
SERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNLNGVTHVIVDE
IHERGMNEDFLLIVLRDLLPHRPELRLILMSATLNAELFSSYFGGAPTLHIPGFTYPVRA
HFLEDILELTGHRLTPYNQIDDYGQEKGWKMQKQAQAFRKRKTQIASAVEDALEAANFKG
YSLRTQESLSSWNPDSIGFNLIERVLCHIVKKERPGAVLVFMTGWDDISSLKDQLQTHPV
LGDPSRILLLACHGSMDSSEQRLIFDKPKDGVHKIVLATNMAETSITIPDAVFVVDCGKA
KETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELL
RTPLQSLCLQIKSLQLGSISEFLSRALQPPEPLSVQNAIEYLKVIGALDENENLTLLGRH
LSMLPVEPKLGKMLILGAIFNCLDPVMTVVSGLSVRDPFLMPFDKKDLAESAKAQFSARD
YSDHLALVRAFDGWKDAERQQSGYEYCWKNFLSAQTMRAIDALRKQFFYLLKDTGLLGQK
TEDCSMLSHDEHLIRAIICAGLFPGICSVVNKEKSITLKTMEDGQVLLHSNSVNAGIPKI
PYPWLVFNEKVKVNSVFLRDSSGVSDSVLLLFGGDLSRGGLDGHLKMLGGYLEFFMKPAL
ADTYLSLKRELEELIQKKLLDPKLDIQSHNELLMAIRLLVSEDQCEGRFVFGRQLPAPSE
KVMKDAVSGKQPCDNSKNELQTVLIRAGHGPPTYKTKQLKNNQFRSTVIFNGLNFVGQPC
NTKKLAEKDAAAEALLWLKGEVHSSSRDINHASALLKKSNKKTKNKALLHGGKWS
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgctactcatcaatttttcagggttctattagaacatcgacaatcatgtcttta
agaacctcctttcctctccatctccataaaaccccatacaaaaccctaataaagcagcat
tctttgttttcattagcttcaatttctactatgatgaatcaccaaaccctatcttttaag
catcatcagggagtggtcaggtgttctggttctcttggttttttggattggagaaccgtt
gccttgccttatttttgcctacagaacttgaattatagtaggtttgcctaccagggcgtt
actagtgatgattcagaccttgaagttgggtcatattcccagcaggcaatgagtggttcc
acccttgataacattgaagattggagatggaagtttaccatgctacttcgcaacaaagat
gggcaagaaattgtctcaagggagaaaaaggacaggcgtgattttgggcatctttcagaa
ttggcaagccgaatgggtttgcatagtcgtcagtattcaagagttgttgtcttcagtaaa
atccctcagccaaattacagaccggatctggatgacaagcgtcctcagagagaggtgacc
ttgccttttggactgcaaagagaagtagatgcccatctcaatgcttacctttccaaaaag
tccacgaacagggaaaatttctctgttaatttcttgccaaaatcaagcaatgggaaaagt
atggctaatactgaaggggtctatgagcagccagatccaatgataaagaacaatgttgtc
atggagagaattctaaggaggaaaagtttgcagctgcaaactaagcagcaagaatggcag
gaaactcctgagggccaaaagatggctgaatttcgccaaagtcttcctgcatataaagaa
agggatgcactgctgaaagccatttctgaaaatcaggtggttgttgtctcaggcgaaact
ggttgtggtaaaaccacacaactcccgcaatacattctagaatctgagattgaagctgcc
cgtggaggtgcctgtagtatcatatgtactcagccccgaagaatatctgcaatggctgtt
tctgaaagagttgctgcagaacgaggggagaaactgggagaatcagttggatataaagtt
cgcctagagggaattaaagggagagacactcgccttctgttttgtactaccggtatatta
ttgcggagattacttgttgacaggaatttgaatggtgttactcatgttattgttgatgag
attcacgaacgtggaatgaatgaagatttcctacttattgtcctgagagatctccttcct
catcgaccggagctgaggttgattctgatgagtgcaactttaaatgctgagcttttctct
tcctactttggtggtgctccgacacttcatattcctggttttacatatccagttcgagca
cattttctagaggacatcctagaattgactggacacaggttgactccatataatcaaatt
gatgattatggtcaagaaaagggttggaaaatgcagaaacaagctcaggcttttagaaag
aggaaaacccagattgcttctgctgttgaggatgcacttgaagctgccaactttaagggg
tacagcctacgcacccaggagtctttatcctcttggaatccagattcaattggtttcaac
ctcattgagcgtgtgctctgccacatagttaagaaagaacgacctggtgctgtgttagta
ttcatgactggttgggatgatattagttctttgaaggatcagctacaaactcatcccgta
ttgggtgatcctagcagaatattgctacttgcatgccatggttctatggacagctctgag
cagaggttaatatttgataagcccaaagatggagtgcacaaaattgttctggctactaac
atggctgagactagtataaccattcctgatgcagtctttgtggttgactgtgggaaggca
aaagagacttcatatgatgcactgaacaatactccttgtttgcttccatcatggatctca
aaggctgcagctcggcaaagaagaggaagagctggtcgtgttcaacctggagagtgttat
catctctatccaagatgtgtttatgatgcttttgctgattatcaactaccagaactttta
agaacaccactgcagtccttgtgcttgcaaattaaaagtctccaacttggtagtatttcg
gagttcctttctagggcattgcagccaccagaacctttatcggttcaaaatgctatcgaa
tatttaaaagtgataggagctctggatgagaacgaaaatctaacgttgctaggacgtcac
ttgtcaatgcttccggttgagcctaagcttgggaaaatgcttatattaggggctattttc
aactgtttagatccagtaatgactgttgtttctggtcttagtgtaagagatccatttttg
atgccatttgacaagaaggatcttgcggagtctgcaaaggcacagttctctgctcgtgat
tacagtgatcacctcgctcttgtccgagcctttgatggttggaaagatgctgaaagacaa
caatctggttatgagtactgttggaaaaatttcctgtctgcacaaactatgagagccatc
gatgctcttcggaagcagttcttttatttgctcaaggatactggtctccttggtcagaaa
acagaggactgcagtatgttgagccatgatgagcatcttattcgagcaatcatctgtgct
ggcttgttccctgggatctgctctgttgtaaacaaggagaagtcaataacattgaaaaca
atggaggatggccaggttcttctccactcgaactctgtgaatgccggtatacccaaaatt
ccatacccatggttagtttttaatgagaaagtgaaagtaaattcagtctttctgcgggat
tcaagtggcgtatctgattctgtgttgcttttatttggaggagatctttcaagaggtgga
ctagatggacacctgaaaatgttgggaggatacttggaattttttatgaaacctgccttg
gcagatacatatttgagcttgaagagagagcttgaagaattaattcagaagaaacttctg
gatcccaagctggatattcaatctcataacgagctcctgatggcaataagattgttggta
tcggaggatcaatgtgagggtagatttgtttttggtcgacagctgccagcaccctcagaa
aaggtgatgaaagatgcagtgtctggcaaacagccatgtgataattctaagaatgagctg
caaactgtgcttatcagggcaggacatggaccacccacctataagacgaaacaactgaaa
aacaaccagtttcgctccactgtgatttttaatggattgaactttgtagggcagccttgc
aacactaagaaacttgcagaaaaggatgcagctgctgaggctctgctgtggctgaagggt
gaggtgcattcatcttctagagatattaaccatgcgtcggctcttctaaagaagagcaac
aagaaaactaaaaataaggctctgcttcatggtggtaaatggagctaa
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