Ricinus communis (castor bean): 8279778
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Entry
8279778 CDS
T01087
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8279778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8279778
Spliceosome [BR:
rcu03041
]
Complex B
Other components
Prp19-related factors
8279778
Complex C
8279778
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_occluded
zf-CCCH_PARP12
RRM_3
zf-CCCH_10
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
8279778
NCBI-ProteinID:
XP_048233022
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All DBs
Position
1:36213853..36217354
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AA seq
502 aa
AA seq
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MAHRLLRDLEADGWERSDFPIICESCLGDNPYVRMTRAEFDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKVRANDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPDDESIKTLYVGGLDARIT
EQDLRDNFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPRPELEGTEEARQQAAVAHGGMLPRAVISQQQNQLHPAGTQDQPPPMHYFNIPPPPQ
QERTYYPSMDPQRMGAVVPSQDGNPTGPTGSGENRNAMERQQGHYPYQGMPPPPGQYQHQ
HYPPYGFMPPMPPYQQYPPYHSAAPLPPATQATQQHQHSMPLPRTAAAGSSSSGPPPPGS
GPPLTGSGPPPPGSGPSTSSKQ
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atggctcatagattgttaagagatctcgaagctgatggctgggaacgctctgactttcct
attatatgcgagtcttgccttggtgacaatccatatgttcgtatgactagagctgaattt
gataaagaatgcaagatatgtacgcggccatttactgtttttagatggagacctgggagg
gatgcgaggtttaaaaagagtgagatttgccaaacatgtagtaagttgaaaaatgtttgt
caagtttgccttttggatcttgaatatggtttgcctgttcaagttcgagacactgctctg
catatcaattctaatgatgctattcctaaaagtgatgttaatcgagagtacttcgctgag
gagcatgatcgtagggcaagagctggtatagattatgaatcttcatatgggaaggtgcgg
gcaaatgacactattctgaagcttcagagaacaacaccatactacaaaagaaatcgagca
catgtttgtagtttctatgttcgaggtgaatgtacgcgaggtgctgaatgcccttacagg
cacgagatgcctatcactggggagctatcacagcagaatataaaagatcgttactatgga
gtgaatgatccagtagctatgaagttacttaacaaggctggtgaaatgccctcactggag
ccgccagatgatgaaagcattaaaaccctctatgtgggcggacttgatgcaaggatcact
gagcaggatctgagggataacttctatgcacatggtgagattgagtccattaaaatggtg
cctcaacgagcaattgcttttgtaacctacacaaccagagagggtgcggagaaggctgca
gaagagctctcaaacaagctagttatcaagggtctgaggctgaagcttatgtggggtaga
ccccaagcaccaagacctgagttagaagggacagaagaagcaaggcaacaagcagcagtg
gctcatggtgggatgctgcctcgagctgttatatctcagcaacagaaccaattacatcca
gctggcactcaggaccaacctccaccaatgcactactttaatattccaccacccccacag
caggaaagaacttattatccatcaatggatcctcaaagaatgggtgccgttgttccatcc
caagatggaaatccaactgggccaacaggatctggggagaacagaaatgcaatggagagg
cagcaagggcactatccttatcaaggtatgcccccgcctccagggcaatatcagcatcag
cattatcctccatatggatttatgccaccaatgccaccttatcaacagtatcccccatat
cattctgcagctccgctgccaccagctacacaagctacccagcagcatcagcattctatg
ccactacccaggactgccgctgcaggttcttcaagttctggacctccacctccagggtcc
ggacctccactcacagggtctggacctccacccccagggtctggaccatcaacttcatca
aagcaatga
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