Ricinus communis (castor bean): 8280293
Help
Entry
8280293 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8280293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8280293
03009 Ribosome biogenesis [BR:
rcu03009
]
8280293
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8280293
Spliceosome [BR:
rcu03041
]
Complex A
U1 snRNP components
U1 related factors
8280293
Complex B
8280293
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8280293
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8280293
NCBI-ProteinID:
XP_015570949
LinkDB
All DBs
Position
8:complement(11753439..11758040)
Genome browser
AA seq
645 aa
AA seq
DB search
MNPYDHRYSDPDSYRHRRSDLTGASPPAGPPPMLGRSYGRSGHPPVPYGGPPPLNFAGRG
GGPAPVGGYPPFEPPVGRFDIGYGGGDAGSVGRGFSGRRVPNGHFGDSRPDASIRGRGSR
GDGGRGGRSGGGRGFGGGGRSGGRGFDGGRGGRGRGGRHGSGGGSRGDLDNIALPKQDFG
NLVPFEKNFYIENPSVQAMSEHEVIMYRARRDITVEGHDVPKPIRIFQEANFPGYCLEVI
AKLGFVEPTPIQAQGWPMALKGRDVIGIAETGSGKTLAYVLPALVHVSAQPRLVQGEGPV
VLILAPTRELAVQIQEEALKFGSRANIRTTCIYGGAPKGPQIRDLHRGVEIVIATPGRLI
DMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKLVSQIRPDRQTLYWSATWPREVETL
ARQFLRNPYKVVIGSTDLKANQSINQVVEIVSEMEKYNRLIKLLKEVMDGSRILIFMETK
KGCDQVTRQLRMDGWPVLSIHGDKNQTERDWVLSEFKSGRSPIMTATDVAARGLDVKDIK
CVVNYDFPSCLEDYVHRIGRTGRAGARGTAFTFFTHANAKFARDLIKILQEAGQIVPAGL
SALGRSAGSLGGSGGNFRTRGRGGFGNRLLISGSNTIPLGAKRPW
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatacgatcacaggtattccgaccctgactcctaccgtcaccgtcgcagtgac
ttgacgggcgcatctcctccggcgggaccgccaccaatgttaggaagatcttatggtcgc
agtggacatccgcctgtgccgtatggtggtcctccacctttgaattttgcaggaagaggt
ggtggtcctgctccagtaggtggttatccgcctttcgagccccctgttggtagatttgac
attggctatggaggcggcgatgctggcagtgtaggtagggggtttagtggtcgacgtgtg
cctaatggtcattttggagatagcagacctgatgcatcaattcgtggaaggggcagccgg
ggtgatggtggacgaggaggacgcagtggtggtggtagaggttttggaggtggtggacgc
agtggaggtagggggtttgacggggggcgtggtggtagaggaagaggaggtaggcatggt
agtggaggaggttctagaggtgatttggataatattgctcttccaaagcaggattttgga
aatttagtaccttttgagaagaatttctacattgagaatccttctgtgcaggctatgtct
gaacatgaagttataatgtatcgggcacgaagggatattactgttgaagggcatgacgtg
cctaagcctattcggatatttcaagaggctaatttccctggttattgcttagaggtgatt
gctaagttgggttttgttgagcctacaccaatccaagctcaaggctggccaatggccctc
aagggtagagacgtaattggcattgctgagactggttctggtaagactttagcatatgta
ctaccggctttggtacatgtcagcgcacagcctcgattggtacagggtgaggggccagtt
gtgttaatattggctcccacaagagaattggctgttcaaatccaagaagaagctttgaaa
tttggttcgcgtgctaatattaggactacttgtatatatggtggtgctcccaagggacct
caaattcgtgatcttcacagaggtgttgagattgttattgctactcctggtcgactaata
gacatgttagaggctcaacacaccaatttgcgaagagttacttaccttgtcttggatgag
gctgataggatgttggatatgggatttgaaccacagattagaaaacttgtatctcaaatc
cgaccagatagacagacgttgtattggagtgccacatggccaagagaggttgaaacttta
gcaaggcagtttctgcgcaatccatacaaggtagtcattggatcaactgatttgaaagca
aatcagtcaataaaccaagttgttgaaattgtctcagagatggagaagtacaacaggcta
attaaactgctaaaagaagtgatggatgggagtcggattctgatatttatggagacaaaa
aaaggctgtgaccaagttacgaggcagttgaggatggatggttggccagttctatccatc
catggtgataaaaatcagactgaaagggattgggtcttatctgagttcaaaagtggcaga
agtcctattatgactgccactgatgttgctgctcggggtcttgatgtgaaggacataaag
tgcgtggtcaactatgattttccttcctgtcttgaggattatgtccacaggatcggtcga
actggtcgtgcaggggctaggggtactgcatttacctttttcacgcatgcaaatgctaag
tttgctagggatcttatcaaaatcctacaggaagcagggcagattgtgcccgcaggattg
tctgctttgggtcggtctgctggttctctaggaggttctggtggtaattttcgcactaga
gggcgaggaggctttggcaatcggttattgatttcaggatcaaatactattcctcttgga
gcaaagaggccttggtag
DBGET
integrated database retrieval system
