Ricinus communis (castor bean): 8280340
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Entry
8280340 CDS
T01087
Name
(RefSeq) rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
8280340
Enzymes [BR:
rcu01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
8280340
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
8280340
NCBI-ProteinID:
XP_002527357
UniProt:
B9SMY8
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Position
2:4850396..4855253
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AA seq
639 aa
AA seq
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MSTPGVHLHIEDHHVVLDNGILQVTLSNPGGIVTGVRYNNVDNLLEVLDDEVNRGYWDLV
WSAAGSTGTTGTFDVFEGTSFRVIVENEDQVEISFTRTWDPSLEGKLVSLNLDKRFIMLR
NSSGFYSYAVFEHLGEWPPFNLPQTRIVFQLRKDKFHYMAIADNRQRFMPLPDDRLPERG
QPLDFPEAVLLVDPVEPEFKGEVDDKYEYSLENKDLKVHGWICFDPPIGFWQINPSSEFR
SGGPLKQNLTSHVGPYTLAMFLSAHYSGEDLVLKLNPGEPWKKVFGPVFMYVNSVEDKDD
ALSLWNDAQEQMLKEVQSWPYSFPASEDFPHSDQRGTISGTLQIRDRYVSNECIPANGAY
VGLAPPGDVGSWQTECKGYQFWTNADADGYFSISSVRSGEYNLYAWVPGFIGDYRNDCVI
KITAGCDINVGDLLYEPPRDGPTLWEIGIPDRTAGEFYIPDPNPKYINKLYINHPDRFRQ
YGLWERYADLYPNEDLVYTVGVSDYKKDWFFAQVNRKKDDGIYQGTTWQIKFELDSLDQS
GTYKLRLALATANVAELQVRINDGKADSPQFTTGEIGHDNTIARHGIHGLYRLYSVDVPG
TQLVEGENSIFLTQTISTGPVQGIMYDYIRLEGPPASDS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactccaggggtgcatttgcatattgaagatcaccatgtggtgctagataatggg
atacttcaggtcacattatcaaatccgggaggaatcgtcaccggggtacggtacaataac
gtcgacaatttgcttgaagttcttgatgatgaagttaatagagggtactgggaccttgta
tggagtgcagcaggaagcacagggacaacaggaactttcgatgtgtttgaaggcacaagt
tttagagtcatagtggaaaatgaagaccaagtagagatttcattcacaagaacatgggat
ccatctcttgaaggcaaacttgtttctctaaatttagacaaaaggtttataatgctccgt
aactcttcaggattttactcctatgctgtttttgagcacttgggagaatggcctcctttc
aacctcccgcaaaccagaattgtcttccagctcagaaaagacaaatttcactacatggcc
atagcagacaacaggcagagattcatgccccttcctgatgaccgcttaccggaaagaggc
caaccactagactttccagaagcagtcttgcttgttgatcctgtggaacctgaatttaaa
ggagaggtggatgataagtatgaatattccttagaaaacaaagatctcaaggttcacggt
tggatatgctttgatccacctatcgggttttggcaaatcaacccgagcagtgagtttcgg
tccggtggacccctgaaacagaacctaacctctcatgttggtccctacactcttgcaatg
tttctaagtgctcattattctggagaagacctggtgttgaaactcaatccaggtgagcca
tggaagaaagttttcggacctgtttttatgtatgttaattctgtggaggataaagacgat
gccctttctctatggaatgatgctcaagagcagatgttaaaggaagttcaaagttggcca
tacagctttccagcttctgaggattttccacattctgatcaacggggtacgattagtggt
acattacaaatccgagataggtatgttagcaacgagtgcataccagcaaatggcgcttat
gttggcctagcaccaccaggcgatgttggatcatggcaaacagaatgcaaggggtaccaa
ttctggacaaatgcagatgcggatggctatttctccatcagtagtgtacgctctggagag
tataatctttatgcatgggttcctggtttcattggggattaccgtaatgattgtgtcatt
aagataactgcaggttgtgacatcaacgtcggtgatctcttatatgagcctccaagggat
ggtccaacattgtgggaaataggcattcctgataggacggccggggaattttacattcct
gatcctaatccaaagtatatcaacaaactttacatcaaccatcctgacaggtttaggcaa
tatggattgtgggaaagatatgcagatctgtaccctaacgaagatttggtttacactgtt
ggcgttagtgactacaagaaagattggttttttgctcaagtaaacaggaaaaaagatgat
ggcatatatcaagggactacatggcaaatcaagtttgaacttgacagtttagatcaaagt
ggaacatataagctgcgattggcactggcaactgccaacgtcgcagaattgcaagttcgc
ataaatgatggaaaagcagattctccccaatttacaactggagaaattgggcatgacaac
acaatagcaagacatggaattcatggcctctaccggctttactctgtagatgtgccaggc
actcagcttgtggagggagaaaactccattttcctgacacaaacaattagcacaggccct
gtccaaggcatcatgtatgattatattcgtctggaagggcctccagcttctgattcctaa
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