Ricinus communis (castor bean): 8280460
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Entry
8280460 CDS
T01087
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9 isoform X1
KO
K18735
protein SMG9
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8280460
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
8280460
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMR_HSR1
NB-ARC
ABC_tran
AAA_18
RsgA_GTPase
AAA_16
MeaB
AAA_22
FeoB_N
nSTAND3
Septin
AAA_30
DO-GTPase2
AAA_17
Motif
Other DBs
NCBI-GeneID:
8280460
NCBI-ProteinID:
XP_048226066
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Position
10:8308024..8310786
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AA seq
403 aa
AA seq
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MAGSSSASPAPKILLAKPGLVTAGPGVGKFGRPGSEDETVTHHRSRLPAIGSLNLLSDSW
EFHIDRFLPFLTENTDFTVVGVIGPPGVGKSTIMNELYGFDATSPGMLPPFTTQSEDNRA
MARHSSVGIEPRVSADRLILLDTQPVFSSSILAEMMRPDGSSTISVLSGENLSAELAHEL
MGIQLGVLLASICHIVLVVSDGVHDDCMWQLMLTVDLLKHGIPDPSSLTSSHLHSSNVGP
EKENKDKSFDSEGYMATPVFVHTKFQGQNFTPLNLMQLRKALAQYFSSSSFMREKCGNLG
KENLISSTVSTTKSNDLHSTPLSLILIPSKNKDDMPRAQHESYISALWKLRDEVLSMNCP
SFARTVSERDWLKNSAKIWELVKNSSIIAEYSRTLQNSGMFRR
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggcgggttcttccagtgcatcaccggctcctaaaatcctattggcaaagccgggactt
gtgaccgctggaccaggagtaggtaaattcgggcgacccggttccgaagatgaaacggtg
acacatcatcgatctcgtttacctgcaattggctctctaaatcttctatctgattcttgg
gaatttcacatcgatcgctttctacctttcttaactgagaatacagattttactgtggtt
ggggtaattgggccaccaggagttggcaaatcaactattatgaatgagctttatggtttt
gatgctacttcacctggaatgctgccgccatttactacacaatcagaagataatagagca
atggcaagacattctagtgttggcattgagccaagagtatctgctgaccgccttatactt
cttgacactcagcctgtttttagctcttctatcttagctgagatgatgaggcccgatggt
tcttcaactatttcagtgttaagtggtgaaaatctatctgctgaattggctcatgaactt
atgggtattcagctcggtgttcttctagcatccatttgtcacattgtgctggtggtatca
gacggagttcatgatgactgtatgtggcaattaatgctgacggtcgatctgttgaaacat
ggcatacctgatccatcttcactaacatcttcacatttgcatagctctaatgtggggcct
gaaaaagaaaacaaagataaaagttttgatagtgaagggtatatggccactccagtcttt
gtgcatacgaaatttcaaggtcaaaattttactccacttaacttgatgcaactgagaaag
gcacttgcacaatattttagctcgtcttcatttatgagagagaaatgtggaaacttggga
aaagagaatctcatttcttctacagtttctactactaagagtaatgatcttcattctaca
ccactgagtttaattttaatcccatctaaaaacaaagatgacatgccaagagctcagcat
gaaagttacatctctgcactatggaaactgagagacgaggttttatccatgaactgccct
tcttttgcaaggactgtctcagaacgtgactggctgaaaaattctgccaagatatgggaa
ctagttaaaaattcttctattattgccgagtatagccggacacttcaaaattcaggtatg
tttaggaggtag
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