Ricinus communis (castor bean): 8280499
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Entry
8280499 CDS
T01087
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
8280499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rcu03009
]
8280499
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
8280499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_EML_2
EIF3I
Utp13
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR41
Beta-prop_Nup120_160
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_ACSF4
WD40_like
PROPPIN
Cytochrom_D1
Beta-prop_WDR75_2nd
SGL
PRTase-CE
Saw1
Motif
Other DBs
NCBI-GeneID:
8280499
NCBI-ProteinID:
XP_002520064
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Position
10:8545455..8553435
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AA seq
881 aa
AA seq
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MASTQMKKNYRCVPSIQQFYSGGPFAVSSDGSFIACACGEAIKIVDSANGAVRATIEGDT
EAATALTLSPDDKLMFSAGHSRQIRVWDLSTMKCVRSWKGHEGPVMGMACHASGGLLATA
GADRKVLVWDVDGGFCTHFFKGHKGVVSSVMFHPDANKMLLFSGSDDATVRVWNLASKKC
IATLERHFTTVTSLEVSEDGWTLLSAGRDKVVNLWDLHDYTCKITIPTYEIVEDLCVIHS
GTQFSSLIGSYSQLSGKSRNGSSAIYFITVGERGIVRIWTSERAVCLYEQNSSDITVTSD
TDESKRGFTASVILPSDQGVLCVTADQQFLLYLAVGHPEEKFKLELNRRLIGYNEEILDM
RFLGEEEKCLAVATNIEQIRVYDLESMSCSYVLPGHTEIVLCLDTCVSRSGRALIVTGSK
DHTVRLWDSESRNCVGVGTGHMGGVGAVAFSKKLKNFFVSGSSDRTIKVWSLDGISEDAD
QFVNLKAKAVVAAHDKDINSLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGI
WSVEFSPVDQCVITASGDKTIKIWAIADGSCLKTFEGHTSSVLRASFLTRGTQFVSCGAD
GLVKLWTVKTNECIATYDQHEDKVWALAVGKQTEMFATGGGDALVNLWYDSTASDKEEAF
RKEEEGVLKGQELENALLYADYTRAIQIAFELRRPHKLFELFSQICRKRGAVNQIENALR
ALGKEEFRLLFEYVREWNTKPKLCHVAQYVLFQVFNILPPTEILEIKGVGELLEGLIPYS
LRHFSRIDRLLRSTFLVDYTLIGMSVIEPNTEAAQTDIPTNVTNEETMLLAEEAEEEEQQ
PEVLKEKTRSKKRKSNKAKDGSHKKVKGTAYTSVAAIPLQA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacacaaatgaagaagaattaccggtgcgtgccgtctatacagcaattttac
agcggtgggccattcgcagtttcgtcagacggttccttcatcgcctgtgcttgcggtgaa
gcaatcaagatcgttgattcggccaacggtgcagtaagagcaactattgaaggcgataca
gaggccgccacggctttgacacttagtcctgatgataaattgatgttctctgctggccac
agtagacaaattagggtttgggacttgtccactatgaaatgtgtgcgctcttggaaggga
catgaaggtccagtaatgggcatggcatgccatgcatcagggggcttgcttgcaacagca
ggagctgatagaaaagttcttgtttgggatgttgatggtggcttctgtactcatttcttt
aaaggtcataaaggtgttgtttcgagtgttatgtttcatcctgatgcaaataaaatgctt
cttttctctggaagtgatgatgcaactgtacgagtttggaatcttgcatcgaagaagtgc
atagcaacattagagagacattttacaactgtgacctctttggaagtgtctgaagacgga
tggacattactcagtgctggaagagataaggtggtaaacttgtgggaccttcatgactat
acctgcaagattacgattccaacttatgagattgtggaagatttgtgtgtaatccactct
gggactcagttttcttcattgataggttcatacagtcagcttagtggaaagagcagaaat
ggatcatcagcaatttatttcattacagttggtgagcgtggcattgtacgaatatggacc
tccgaacgtgcagtttgcctttatgagcaaaactcctcggatattaccgtcacctcagac
acagatgagtcaaaaagaggcttcactgcttctgtgatccttccttcagatcagggagtg
ctgtgtgtgactgctgatcagcagtttttactctatttggcagtgggacaccctgaagag
aagtttaagttagaattgaacaggagacttattgggtataatgaggagattctggatatg
aggtttctgggtgaggaggaaaagtgtcttgctgttgccacaaatattgaacagatccgg
gtgtatgacttggaatctatgtcgtgctcttatgtattgcctggtcatactgaaattgtt
ttgtgccttgacacctgcgtgtcaagatctggaagggcacttatagtaacaggaagcaag
gaccacactgtaaggttgtgggattcagaaagtagaaattgtgttggtgttggaacaggt
cacatgggaggtgttggagctgttgcattttcaaagaagttgaaaaatttctttgttagt
ggtagcagtgatcgtaccatcaaggtgtggagtttggatggtatctccgaagatgcagac
cagtttgttaatttgaaagcaaaggcagttgtagcagctcatgataaagatataaattct
ctggccattgcaccaaatgatagtttagtctgtagtggttctcaagaccggactgcctgt
gtatggaggcttccagatctagtatctgtagttgtactcaaagggcataaaagaggaatt
tggtctgttgagttctcaccagttgaccaatgtgtcattacagcatctggcgacaaaaca
ataaagatatgggctatagctgatgggtcttgcttaaaaacatttgaagggcatacatca
agcgtattaagagcttcatttttgactcgcgggacccaatttgtttcatgtggtgctgat
ggtttagtaaagctgtggactgtaaaaacaaatgaatgcatagccacatatgatcaacat
gaggataaggtttgggccttggccgtaggaaaacagacagaaatgtttgccactggtggt
ggtgatgcattggtcaatctgtggtatgattcaactgcctctgataaagaagaagccttc
cgtaaagaggaggaaggggttttaaaaggtcaggaattggaaaatgctttgttatatgct
gattacactagagctatccaaatagcatttgaacttcgcagacctcataaactttttgag
ttattttcccaaatttgcaggaagagaggcgctgtcaatcagatagagaatgcgcttcgt
gctcttggcaaagaggaattccgtctacttttcgagtatgttcgggaatggaatacaaag
ccaaaactatgccatgttgcacaatatgttctctttcaagttttcaacatccttcctcca
acagagattcttgagataaagggggtcggggaacttcttgaaggtctaatcccatattcc
ctgaggcatttcagcaggatagaccgattactaagaagcacatttttggtggactataca
ctgataggaatgtcagttattgagccgaacactgaagctgcacaaacagatatacccacc
aatgttacgaatgaggaaaccatgcttttagcagaagaagctgaggaagaggagcaacaa
cctgaagtgttgaaagagaaaactcgttcaaagaagcggaaatcaaacaaagctaaagac
ggttcacataagaaagtcaagggcacagcttacacaagcgtagctgctattccattacag
gcataa
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