Ricinus communis (castor bean): 8280886
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Entry
8280886 CDS
T01087
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8280886
03036 Chromosome and associated proteins [BR:
rcu03036
]
8280886
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
8280886
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
8280886
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
8280886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
UvrD-helicase
ResIII
AAA_22
PhoH
DEAD
Helicase_RecD
ATPase_2
AAA_16
Mov-10_helical
SLFN-g3_helicase
AAA
AAA_7
Cep192_D4
NPHP3_N
nSTAND3
AAA_24
AAA_5
Motif
Other DBs
NCBI-GeneID:
8280886
NCBI-ProteinID:
XP_002517101
UniProt:
B9RTN2
LinkDB
All DBs
Position
9:complement(3288267..3292679)
Genome browser
AA seq
882 aa
AA seq
DB search
MGTIEGKWDDDEYSVIGDKGEIGFIDYQDDKSVCSYDPIEEGPIFISVPFPFENGKPQSV
VLGETASDSITIKNTTDEAVDLWAKIYASNPNNSFTLSLMEPPSANGGNSSRGFLESFNL
EDRMLQAGDSLTVWLNCKPQEIGLYTTVVYFDVGSDRIERVVFLLAEDKISRSLASKKPY
SRTRRTKQFTVDTYVAGSRPMRKAGWALKNRLPRYDIPMEVRELIESKQTPDAVTGGLTR
ENYASYFKTLLIMEEIHMEEDMRSYDMEGVRMRRMGNVLALMVPGLAERRPSLVYGDYIF
VKLANVDKTTQPYQGYIHRVEADEVYLKFDPQFHTCHSDGNLYDVHFTYNRVNIRRQYQA
VDAAENLEMELLFPSECFGNRLTETAPLVPITCNLNEEQMCSIEMILGCKRAPPYIIYGP
PGTGKTMTIVEAILQLYKNRKDTRILVCAPSNSAADHLLEKLLREKAANIRQNEIFRLNA
TSRPFGDIKSDYIRFCFFDELLFKCPPLSALRRYRIIISTFMSACYLYAEGVERGHFSHI
FLDEAGQASEPESMIPLSNLCGRDTVVVLAGDPKQLGPVIYSRDAGDLGLQKSYLERLFE
CECYCNGDENYITKLVRNYRCHPEILKLPSELFYEGELIASKESNDDTISLLSSVNLLPG
REFPVLFFGIQGCDEREGNNPSWFNRIEASKVVEIINKLIAGGNLNEVDIGVITPYRQQV
LKLKKAFDDLDMPDIKVGSVEQFQGQERKVIVISTVRSTVKHNDFDRAHCLGFLSNPKRF
NVAITRAMSLLILIGNPHIVNKDPHWSKLLWYCADHESYQGCGLPEGEEYVEEYQIQDDG
ANYDYYNGNPQSTEEHGWNQDYCQAETPKPVTDETEWSDGWK
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgattgaaggcaaatgggatgatgatgagtactcagtaattggagacaaaggt
gaaattggatttattgattatcaggatgacaaatctgtgtgtagttatgatccaattgaa
gagggtcctattttcatttctgttccattcccctttgaaaatgggaaacctcagtcagtg
gttcttggagaaactgcttcagattcaatcactattaagaacaccaccgatgaagccgtt
gatttgtgggctaaaatttatgcctccaatcccaataattctttcacactttccttgatg
gagcctccatcagcaaatggtgggaacagcagccgaggtttcctagagtcttttaatttg
gaagacagaatgcttcaggctggtgactcgttaaccgtttggctaaattgcaaaccacag
gaaattggattgtatactacagttgtgtattttgatgtgggaagtgatagaattgaacga
gtggtttttctgttggctgaagataagatatctaggtctttggcatcaaaaaagccatat
tcaagaactagaagaacgaagcagtttactgtggacacatatgttgcaggttcacgacct
atgaggaaggcaggatgggcattgaaaaataggcttcctcgttatgatattcctatggaa
gttagagaattgattgagagcaagcagacccctgatgctgtcacaggaggtctaacaaga
gagaattatgcttcttattttaaaaccttgttgatcatggaagaaatacacatggaggaa
gacatgagatcttatgacatggagggtgtcaggatgaggaggatggggaacgttctggcc
ctcatggtcccagggcttgctgagcggagaccttcacttgtctacggagattacatcttt
gtcaagcttgcaaacgtggataaaacaacccagccatatcagggctatattcatcgtgtt
gaggctgatgaagtgtatttgaaatttgacccacaatttcacacctgccattcagatggg
aatctgtatgatgtacacttcacgtataatcgagtcaatataagaagacagtatcaggca
gtagatgccgctgaaaatttggaaatggagctcttatttccatccgaatgctttggaaat
aggcttactgaaactgcacctctggtgccaataacttgtaaccttaatgaagagcaaatg
tgttcaatagagatgatccttggctgcaaaagagctccaccctatataatttatgggcct
ccaggtactggtaaaactatgacaatagtggaagcaattctccagctgtataaaaaccga
aaggatacacggattcttgtgtgcgcaccctcgaatagtgcagcagatcacttgctagag
aagcttctccgtgagaaggctgctaacattcgacagaatgaaatattcagactcaatgca
acttcccgaccattcggagatatcaagtctgattatattcgcttttgtttcttcgatgag
cttctcttcaaatgtccccccctcagcgctctcagacgctataggatcatcatatcaaca
tttatgagtgcttgttatctctatgcagagggtgttgaacgaggtcatttctctcatatt
ttcctggatgaggctggccaagcttcagagccagaaagtatgatccctttatccaacctc
tgtgggagggatacagttgtcgttcttgctggagaccccaagcagttgggtcctgtaata
tactcgagagatgcaggggatctgggattacagaaatcatacttggagaggctttttgaa
tgtgaatgttactgcaatggagatgaaaattatataacaaaactggttaggaactaccga
tgtcacccagaaattctaaaactgccttcagaactcttctatgaaggggagttgattgcg
agcaaagagtctaatgatgataccatttccttgttgtcttcggtaaatctgcttccggga
agggaatttcctgtcctcttttttggtatacaagggtgtgatgagagggaaggaaataac
ccatcatggttcaaccgaattgaagcaagcaaggtggtggagatcataaacaaactgatt
gctgggggaaatctgaatgaggttgatattggggtcattacaccttataggcagcaagtg
ctcaaactaaagaaggcctttgatgatttggatatgcctgacataaaagttggcagtgtt
gaacaatttcaaggtcaagaaagaaaagtaattgtcatttctactgtcagatcaacagtg
aaacacaatgactttgacagagctcattgtttgggttttttgagcaatccaaaaaggttc
aatgtggctattacccgtgcaatgtcactgcttatcttaatcgggaatccgcatattgtc
aataaggacccacactggagtaagcttttatggtattgtgcagaccacgagtcttatcag
ggttgtggtctcccagaaggagaagagtatgttgaagaatatcaaatacaggatgatggt
gccaactatgactattataacggaaaccctcagtccactgaagagcatggatggaatcaa
gactactgtcaagcagaaactccaaagcctgtcacggatgaaactgaatggtctgatggt
tggaagtaa
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