Ricinus communis (castor bean): 8281396
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Entry
8281396 CDS
T01087
Name
(RefSeq) polyadenylate-binding protein 3
KO
K13126
polyadenylate-binding protein
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03015
mRNA surveillance pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8281396
09123 Folding, sorting and degradation
03018 RNA degradation
8281396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8281396
03041 Spliceosome [BR:
rcu03041
]
8281396
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8281396
mRNA cycle factors
Stress granule specific factors
8281396
Spliceosome [BR:
rcu03041
]
Complex C
Other components
Complex C specific factors
8281396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_RdRP1_2
SET_assoc
RRM_MARF1
Motif
Other DBs
NCBI-GeneID:
8281396
NCBI-ProteinID:
XP_002527095
UniProt:
B9SM76
LinkDB
All DBs
Position
2:complement(9161286..9164998)
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AA seq
661 aa
AA seq
DB search
MAAAAAAVTTTEIPVDTVTVAANGGGGGGSGGGSGGGNGSGEGGQFANLSLYVGDLEQNV
NEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKALNFTPLNGKPI
RIMFSHRDPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYG
FVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETIT
NEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWY
VGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKLKELFSEFGSITS
CKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKARLQAH
FALVRAPGALAPLPSGIPGYNAGAPRLAPQQLYFGQGTPGMMPPQHAGYGFQQQILTSMR
PAVGPNFIFPYHLQRQGQPGQRMGMRRGGNPQQMQQQQQLLHRNNNQGLRYVGNARNSGN
SSVVPQGLAGPMVPLPFEVSGASVDVQPPVTISTLASALASATPEKRTEMLGDHLYPLVE
RLQPDHVAKVTGMLLEMDQTEVLHLIESPDSLKKKVAEAMQVLREATANVGDQLGSLVLN
E
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcagcagcagcagttactacaacagagataccagtggatactgtgacggtg
gctgctaatggtggtggtggtggtggtagtggtggtggtagtggtggtggtaatggtagt
ggtgagggtggacagtttgccaatttatcattatatgtaggggatctggaacagaatgtg
aatgaagaacaattatatgatctctttagccaaatagcacaagttgtttctgttagggtt
tgcagagatcaaacgaaacgatcttctcttggttacggttacgtgaatttcagtaatcct
caagatgctgcaaatgctatgaaggctctgaatttcactcccttgaatgggaaacctatc
aggattatgttttctcatcgagatcctagtattagaaaaagtggctatggcaatgttttt
attaagaacttggactcaactcttgataacaagttgttgcatgagacatttgctgccttt
gggacagtcctttcttgcaaggtagctgttgatagcaatggccaatctaagggttatggt
tttgtacagtttgaaaatgaggaatctgcagaaagagctatcagtttcttggatggcatg
tgtttaaatgataaacaagtttatgttggattttttgtacgacaacaggagagaactcgg
acaaatggttccccaaagtttactaatgtttatgttaagaacttgtctgagacaataacc
aatgaggatcttgagaaagtttttggtgtttacgggaccataactagtgcacttgttatg
aaggatcaaactggcaagtctagaggatttggatttgtgaactttcaggacccagattct
gctgctgccgctgttgagaaactgaatgggaccacagcccatgatgacaaagcttggtat
gttggtagggcccaaaggaaatcagaacgggaggcagagttgaaagccaagttcgaacag
gaaagaaacagtagatatgaaaggttaaaggctgcaaatttatatctgaaaaatcttgat
gacaacattaatgatgtgaaactgaaggaattgttttctgaatttgggtcaataacatca
tgcaaggtcatgcttgatcaccaaggtgtgagtaagggctctggttttgttgctttctct
acccctgaggaagcttcaagagctctgaaggaaatgaatggaaagatgattgggaggaaa
cctctttatgttgctattgcccaacgcaaagaagaaagaaaggctcgactacaggcccat
tttgccctagttcgagcgcctggtgcactggctcctttgccttccggtattcctggctat
aatgcaggggcaccaaggcttgcaccacagcaactttactttggtcaagggacacctggt
atgatgccccctcagcatgcagggtatggcttccagcagcaaatcttgaccagtatgcgc
cccgctgttggcccaaactttatctttccatatcaccttcaaagacagggtcaacctggg
caacggatggggatgcggcgtggggggaaccctcaacagatgcagcagcagcagcagcta
cttcaccgtaacaacaatcaaggattaagatacgttggcaatgcaagaaacagcgggaat
tcgtctgttgttccacaaggtctagcaggtcccatggttccattgccctttgaggtttca
ggagcttcagtagatgttcagccaccagttaccatctcaacccttgcatctgcattggct
tctgctaccccagagaaacggactgagatgctgggtgatcacctttatccgcttgtggag
aggcttcagccagatcacgtggcaaaggtgactgggatgctattagagatggatcaaaca
gaggtactacatctcattgagtctcctgattctctgaaaaagaaggtggctgaagcaatg
caagttcttcgagaagctactgctaatgttggcgaccagcttggctcattggtgctgaat
gaatga
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