Ricinus communis (castor bean): 8281757
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Entry
8281757 CDS
T01087
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8281757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8281757
03041 Spliceosome [BR:
rcu03041
]
8281757
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
8281757
Spliceosome [BR:
rcu03041
]
Complex B
Other components
Prp19-related factors
8281757
Complex C
8281757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
UTP6_C
ARM_TT21
NRDE-2
PPR
Pyruv_OxRed_insertion
Motif
Other DBs
NCBI-GeneID:
8281757
NCBI-ProteinID:
XP_002521433
UniProt:
B9S614
LinkDB
All DBs
Position
5:complement(13241810..13248433)
Genome browser
AA seq
916 aa
AA seq
DB search
MSIPRELYPSQDDLLYEEELLRNPFSLKLWWRYLVARRESPFKKRFIIYERALKALPGSY
KLWHAYLTERLEIVRNLPVTHSQYETLNNTFERALVTMHKMPRIWIMYLQILTNQKLITR
TRKNFDRALCALPVTQHDRIWELYLRFVSQEGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSHLWQEAAERLASVLNDDQFYSIKGKAKHSLWLELCDLLTRHAKEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRGLFEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESMV
AHKMESLDLSDDEGEALEESGDEKDEDVRLEVNSKFEKKMLNGFWLHEDNDVDLMLARLE
YLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPH
TLWVAFAKLYENHNDLVNARVIFDKAVQVNYKTVDNLASIWCEWAEMELRHQNFSGALEL
LRRATAEPSVEVKRRVAADGNEPVQMKVHKCLRLWTFYVDLEEGLGDLESTRAVYERILD
LKIATPQIIINFALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK
LERARELFEHAIDMAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNTEKLEMY
EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAKLEKNLGEIDRARGIYVFA
SQFSDPRSDADFWNEWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQR
LNIDEAKDKLKLAGVPEDEMAALERQLAPVANNNTAKDSSRKVGFVSAGVESQNDGVIKV
NANQEDIELPEESDSEDDEKVEITQKDVPSAVFGGLARKREEVESDEAGNHATAAKDKDG
EGPLGALARMKRQRQA
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattcctagagagctttacccttctcaagatgatctcctatatgaagaggagctt
ttgcgtaacccttttagtcttaagctctggtggcgttacctagtagcccgccgggaatcc
ccttttaagaagcgtttcataatatatgagagagcccttaaagctttacctggcagttat
aagctttggcatgcttatcttaccgagcgtcttgaaattgttagaaatttacccgttact
cattcccaatatgaaaccctgaataatacatttgaaagagctttggttactatgcacaaa
atgcccagaatttggattatgtacttgcaaattttgacaaaccagaaattgattactcgc
acacggaaaaattttgatagagcactctgtgcattgcctgttacacagcatgataggatt
tgggagctatatttgagatttgtgagccaagaggggatacccatagagacgtcgctcaga
gtttataggaggtacttgaaatatgatcctagtcatattgaggattttattgagtttttg
gtgaattctcatctctggcaagaggctgctgagaggctagcttctgtgctgaacgatgat
cagttttattcaataaaggggaaagcaaagcattcattatggctagaattgtgtgatttg
cttactagacatgcgaaggaggtgtctgggttgaatgtggatgccattattagaggtgga
attaggaagtttacagatgaagttggaaggttgtggacatctcttgctgattattatatc
aggaggggattgtttgagaaggcaagggacatttttgaggagggaatgactacagttgtt
acggtgagagattttagtgttatttttgatgcatattcacagtttgaagagagcatggtt
gctcataagatggaaagtttagatttaagtgatgacgaaggggaagcactggaggagagc
ggtgatgagaaggatgaagatgttcgtttggaagtgaactctaagtttgagaagaagatg
cttaatgggttttggttacatgaagataatgatgtggatttgatgctggcccgattggaa
tatctcatggatagaaggccagaattggccaatagtgtacttttgcggcaaaatccacat
aatgtggaacagtggcacaggagggttaagctttttgagggtaatcccactaagcagata
ttgacttatactgaggcagtaaggacagtagatcctatgaaagctgtcgggaagccccac
actttgtgggtggcttttgctaagctctatgagaatcacaatgatcttgttaatgcaaga
gtaatttttgacaaggcagtgcaagtgaactataaaactgtggataatctagctagcatt
tggtgtgagtgggctgaaatggaacttagacaccaaaatttcagtggcgcgctggagctg
ttgaggcgggccacagcagaaccatcagttgaggtcaaacgaagagtggctgctgatggc
aatgaaccagtccagatgaaggtgcataagtgcctcagactctggaccttttatgtcgat
ttggaagagggccttggagacttggagtccacacgagcggtttatgagcggatattggac
ctaaaaatagccacaccgcagatcattattaattttgcattgcttctagaagaacataaa
tacttcgaagatgctttcaaggtttatgaaaggggagtgaagatattcaagtaccctcat
gtcaaagacatatgggtcacatatctttcaaagtttgtaaagagatatgggaagacaaaa
ctggaacgggcaagagagttgtttgaacatgctattgacatggctcctgctgatgcggtg
aaacctttgtatcttcaatatgcaaagctggaagaggattatggtttggcaaagcgagct
atgaaggtttatgatcaagcaactaaagctgtccccaatactgaaaaattggagatgtat
gaaatctatattgcccgtgcagcagaaatatttggtgtcccaaaaacaagagagatatat
gagcaagccattgagtctggtcttcctgacaaggatgtaaaaacaatgtgtttgaagtat
gcaaagttggagaaaaatttgggagaaattgatcgtgcacgtggtatatatgtatttgct
tctcaattttctgatccacgatctgatgctgatttctggaatgaatggcatgagtttgag
gtgcaacatggaaatgaggatactttccgggaaatgctgcgtattaaaagaagtgtttct
gcaagctatagccagacacactttattctgccagagtatttaatgcagaaggatcaaagg
ctgaacattgatgaggcaaaagacaaattgaaattagctggggtccctgaagatgaaatg
gctgctctagaaaggcagttagcccctgtggccaacaacaatacagctaaagatagcagc
agaaaggttggatttgtgagtgctggagtggaatcacagaatgatggagtgataaaggtt
aatgcaaatcaagaagacattgaactgccagaagaaagtgactctgaagatgatgaaaaa
gtggaaatcacacaaaaagatgttccatctgctgtctttggaggattggctaggaagaga
gaagaggttgaatctgatgaagctggaaaccatgccactgctgcaaaggacaaggatggt
gaaggccctcttggtgcccttgcaagaatgaaaaggcaaagacaagcatga
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