Ricinus communis (castor bean): 8281770
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Entry
8281770 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8281770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8281770
03009 Ribosome biogenesis [BR:
rcu03009
]
8281770
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8281770
Spliceosome [BR:
rcu03041
]
Complex A
U1 snRNP components
U1 related factors
8281770
Complex B
8281770
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8281770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8281770
NCBI-ProteinID:
XP_002521446
UniProt:
B9S627
LinkDB
All DBs
Position
5:complement(13318792..13325700)
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AA seq
781 aa
AA seq
DB search
MAATATAGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPIATALPSKSSLV
PISSSVQVQQSSRRGYSPVKEEDRYGRGNGSGSKPDAGTNFNQNAKGGGFQSQNVPNGTA
NGPGGPSARGHGSSAGGSILSPEAYRRRHEISVTGDDVPPPLTTFEATGFPSEILREVLS
AGFSVPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPQLGPTVLV
LSPTRELATQIQDEAVKFGRSSRISCTCLYGGAPKGPQLKELDRGVDIVVATPGRLNDIL
EMRRISLSQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPREVRKIAAD
LLVNPVQVNIGNVDELVANKSITQYIEVLAPMEKHRRLEQILRSQEPGSKIIIFCSTKKM
CDQLARNLTRTFGAAAIHGDKSQSERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVI
NYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDAKYASDLIKVLEGASQRVPPEIRDM
ASRGSGMSKFRRWGSAPGGRDGGRGGRSDFGYSGRDGGRGSFGMSSSYSSRPEKGGGRGY
DYESRDRSDRGRSRSRSPDRGSGLGDRSKSWNRDRSRSPDRNNRAPPTRSPVRSFHQAMM
EKGRASSPPQNQLERSRSPCNGGGSSFYRPSTRERSPVRSFHQAMVDKGPVSQPPRNKLD
RSGSPYGGGGPGSGHVDRGYNDGPRSHFGEEEEEGMIPADEDGIIPPDDGGMYRGADKGT
H
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgctactgctggtccgcggtatgcaccggaggatcctactctaccaaaa
ccatggagaggactagttgatggtaaaactgggtacctttatttctggaatccagagaca
aatgtgactcaatatgagaggcctattgccacagctcttccatcaaagtcttctttagtg
cccataagttcttcagttcaagttcagcaatcttctcgccgaggctatagccctgttaaa
gaagaagataggtatggcagaggaaatggcagtggatcaaaacctgatgctgggacgaat
tttaatcagaatgcaaaaggtggaggatttcaatctcaaaatgttcctaatggaacggct
aatggacctggtggcccttctgctaggggacatggatcatcagctggaggaagtatttta
tctccagaggcttatcgtcgtcggcatgaaatttcagttaccggagatgacgtgccccct
cctcttactacatttgaagctactggatttccttctgagattctgagagaggtactcagt
gcaggcttctctgtcccaactccaattcaggcacaatcatggccaattgctttgcaaagc
aaagatatagtggccatagctaagactggctcgggcaagaccttaggttatttacttcct
gggtttattcatctcaagcgctgccgtaatgaccctcagctgggtccaactgtgttggta
ttgtcaccgacaagagagttggcgacgcagatacaggatgaagctgtgaaatttggaagg
tcttcaagaatctcttgcacgtgtttgtatggaggagcacctaagggtccacagttgaaa
gaactagacagaggagtagatattgtggttgccactcctgggcgtttgaatgacatactt
gaaatgaggagaatcagcctgagccaagtttcttaccttgtactagacgaggctgatcga
atgttggacatgggttttgaaccccagataaggaagattgtaaaagaggtgccttctcga
cgccagaccctcatgtatacagcaacttggccacgggaagttcggaaaattgcagctgat
ctgctggtcaatcctgttcaagttaatattggcaatgttgatgagcttgtggcaaacaaa
tcaatcacacagtatattgaagtattggcacccatggagaaacacaggaggttggagcag
atattacggtctcaagaaccgggatcaaaaattattattttttgttcaacaaaaaagatg
tgcgatcaacttgctcgcaatcttacccggacatttggagctgctgctattcatggagat
aaatctcagagtgagagggatcatgttctaagtcagttccgcacagggaggtctccagtg
cttgtcgctactgatgttgctgctcgaggactggacattaaagacatcagggtggttatc
aactatgattttcctactggagtggaagattatgttcataggattgggaggactggcagg
gcaggtgctactggagttgcttacacgttctttggtgaccaggatgccaagtatgcttca
gaccttatcaaagtattggaaggggcaagccagcgagtccctccagagattcgtgatatg
gcttctcgtggtagcgggatgagtaagtttagacgttggggctctgcccccggcggacgt
gatggaggccgcggtggacgcagcgattttggttacagtggaagggacggtggaagaggt
agttttggaatgtctagttcctattctagtaggccagagaaaggcggaggtcgtggatat
gactatgagtcacgagacaggagtgatagaggtcgcagccgcagtcgaagcccagatagg
gggtcaggtttaggtgaccgtagtaaaagttggaaccgtgatcgcagccgtagtcctgat
aggaataacagggctccacccacacgctctcctgtgcgcagttttcatcaggctatgatg
gaaaaaggtcgggcatcctcaccgccacaaaatcagctggagagatcaagatctccttgt
aatggtgggggcagcagtttttacaggccatctacacgtgaacggtctccagtccgcagc
tttcaccaggcaatggttgacaaaggtccggtatctcaaccgcctcgtaacaagcttgat
agatcaggatctccctatggtggtggtggtcctggaagtggacatgtggatagaggatat
aatgatggtcctcgttctcattttggggaagaagaggaggaaggcatgattccagctgat
gaagatggtataataccaccagatgatggaggcatgtaccggggagcagataagggcacc
cattga
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