Ricinus communis (castor bean): 8281906
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Entry
8281906 CDS
T01087
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10 isoform X2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8281906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8281906
03041 Spliceosome [BR:
rcu03041
]
8281906
03009 Ribosome biogenesis [BR:
rcu03009
]
8281906
03016 Transfer RNA biogenesis [BR:
rcu03016
]
8281906
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8281906
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
8281906
Spliceosome [BR:
rcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
8281906
Complex C
U4/U6.U5 tri-SnRNP related factors
8281906
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8281906
Transfer RNA biogenesis [BR:
rcu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
8281906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Death_3
Motif
Other DBs
NCBI-GeneID:
8281906
NCBI-ProteinID:
XP_025015247
LinkDB
All DBs
Position
2:31313881..31324901
Genome browser
AA seq
843 aa
AA seq
DB search
MEESPTPTVKRKETEIGDTPQQESAQKRRNLTRTCVHEVAVPIGYVSTKEESIHGTLSNP
EFNGDNAKTYPFELDPFQKVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVI
YTSPLKALSNQKYRELHQEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEILKEV
AWVIFDEIHYMKDRERGVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICHLHKQPCHV
VYTDFRPTPLQHYVFPMGGVGLYLVVDENEQFREDNFVKLQDTFTKQKVGDWNKSSNGKG
SGRIAKAGNASAGSDIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKD
VVEQVFKNAILCLNEEDRDLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVKA
LFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIM
IDERMEMNTIKDMILGKPAPLVSTFRLSYYSILNLMRRAEGQFTAEHVIKNSFHQFQYEK
ALPDIGKKVSKLEEEAAVLDASGEAEVAEYHNLKLEMAQLEKKMMAEITRPERILYYLCT
GRLIRVREGGTDWGWGVVVNVVKKPAAGLGTLPSRGGGYIVDTLLHCSPASSESGSRPRP
CPPRPGEKGEMHVVPVQLPLISALSKVRISVPSDLRPLEARQSILLAVQELGTRFPDGLP
KLNPVKDMKIEDPEIVDLVNQIENMEKKLHAHPLHKSQDMNQIRNFQRKAEVNHEIQQLK
SKMRDSQLQKFRDELKNRSRVLKRLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGC
CWH
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcaccaacaccaaccgtgaagcgtaaggaaacagaaattggagatacccca
caacaagaatctgctcaaaagcgaagaaatttaacaagaacttgtgttcatgaggttgct
gtacctattgggtacgtttcaactaaagaggaaagcatccatggtactctgtctaatcct
gaatttaatggagataatgcaaagacttacccttttgaactcgacccgtttcagaaagta
tcagtagcatgcttagaaagaaatgagtctgttcttgtttctgctcatacatctgctggt
aaaactgcagttgcggagtatgcaattgctatggcttttagagataagcaaagagttatt
tatacatctcctttgaaagctttgagtaatcaaaagtacagagagttacatcaggaattt
caagatgttggtttaatgactggtgatgttactctctctcctaatgctagttgtttagtt
atgacgactgagattcttagaggtatgctttatagaggatcagagatcttgaaagaagtt
gcttgggtaatttttgatgaaattcattatatgaaggatcgtgaacgtggggttgtttgg
gaagagagtattatatttttgccacctgaaattaagatggtttttctttctgcaactatg
tcaaatgctactgaatttgctgagtggatttgtcatttgcataagcagccttgtcatgtt
gtttacactgattttcgaccgacacctttgcagcattacgtttttcctatgggcggtgtt
gggttgtatcttgtggttgatgagaatgagcagttcagggaagacaattttgtgaaactt
caagacacctttacaaaacagaaagttggtgattggaataagagctcaaatggtaaagga
agtggaagaattgctaaagctgggaatgcttctgctggttctgacatatacaagattgtc
aagatgattatggaacgaaaatttcaaccagttatagtcttcagcttcagtagaagagag
tgtgaacaacatgcaatgtctatgtctaaacttgattttaatacccaagaggaaaaggat
gttgtggaacaagtatttaagaatgcaatactctgcttgaatgaggaagacagagacctg
cctgctattgagttgatgctgccactacttcagcgaggcattgctgtccatcattctggc
cttcttcctgtcatcaaggaacttgtagagcttctttttcaggaaggccttgtaaaggcc
ctttttgccacagagacatttgccatgggtttaaacatgcctgcaaagactgttgtgttc
acagctgttaagaagtgggatggtgatagccatcgctacattggatctggggagtatatc
caaatgagtggaagggctggacgccgtggcaaagatgatcgcggtatttgtataataatg
attgatgagcggatggagatgaataccattaaggacatgattttgggtaaaccggctccc
ctagttagtacattcagactgagctactattcaattttaaatctaatgaggcgtgcggaa
ggccagtttactgctgaacatgttattaaaaactcattccaccaatttcagtatgagaag
gctttacctgatatagggaagaaagtttcaaaactggaggaggaagctgcagtgctggat
gcttcaggagaggctgaagtagctgaatatcacaatttgaagcttgagatggcccaactt
gagaagaagatgatggcagaaataaccaggcctgaaaggattctttattatctttgcact
ggacgattgatcagggtaagagaaggtggaactgattggggctggggagttgtggtgaat
gttgtaaaaaaacctgctgctgggttaggcacattgccatcacgtggtggtggttatata
gtggatactttacttcattgttcacctgcatcaagtgagagtggttcacgaccgagacct
tgtccgcctcggcctggagaaaagggtgaaatgcatgtggtccctgttcagttgcctttg
atttctgctctaagtaaagtcagaatatctgtcccttctgacctccgaccactagaagca
agacagagtatactacttgctgtgcaggagttgggaactcggtttcctgatggtcttcca
aaattgaatcctgtaaaggacatgaaaattgaggatcctgaaattgttgatttggttaac
cagattgagaatatggagaagaagttacatgctcatccactacacaagtctcaagatatg
aatcagattagaaatttccaaaggaaggcagaggtgaatcatgaaattcaacaacttaag
tcaaaaatgcgagattcacagctccaaaaatttcgtgatgaactgaagaatcgttcgcga
gtcttgaagaggctcggccatatagatgcagatggtgtggttcagctaaaaggcagggca
gcctgtttgatagacacaggagatgaactacttgttactgaattgatgttcaatggttgc
tgttggcattga
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