Ricinus communis (castor bean): 8281969
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Entry
8281969 CDS
T01087
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8281969
03015 mRNA surveillance pathway
8281969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8281969
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8281969
mRNA cycle factors
P-body specific factors
8281969
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
8281969
NCBI-ProteinID:
XP_048231473
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Position
6:complement(27182950..27195764)
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AA seq
1194 aa
AA seq
DB search
MEQHEDDGRVGGESQSKQDDEEAAARLEEIKKSIEAKAALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKSGEELDVDRNSKAMKKRSTLKLLLELYFVGVIED
SSIFINIIKDLTSVEHLKDRDATQTNLTLLASFARQGRVFLGLSLSGQEIHEEFVKGLNI
TTDQKKIFRKAFNTYYDAVSELLQSEHTSLRQMEHENAKILNAKGELSDENVASYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGEDASSPATGKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKVNEQSVKTQEQPSEVPPESDQGQPTQDTAESSADTG
TVQEGKSIEKGKDKDEKDKEKAKDPEKEKNKEKDAERKGENEKDKLKGLEGTSLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFLGELCKFKIAPPGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLYQYIRKLLFSDLEKSSIEYVLRQLRKLPWSECDAYLLKCFMKVH
KGKYGQINLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRYLGE
LYNYELVDSSVIFETLYLILGFGHDTPERDVLDPPEDCFRIRMVITLLETCGHYFDRGSS
KRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFADLRPSMTRYSSIEEVNAALIELEENE
RTGSIDKVNNEKHYDSEKPSSRNASNAISANGQNIVNGNEENGGIHEDIGDTDTDSGSGT
IDQEGHDDEDLDEENHDDGCDTEEDEDDDGGGPVSDEDDEVLVRQKVAEVDPVEAENFEQ
ELRAVMQESMEQRRQELRGRPMINMAIPMTMFEGSTTHGRGVGGESGDEALDEEAGGSKE
VQVKVLVKRGNKQQTKQMSIPRDCSLVQSTKQKEAAEFEEKQDIKRLVLEYNDREEEENN
GLGTQTLNWMPSGSNRTGSRGSMWEGSSSRGTGSRHRHQYQHHSGSGVYHGRRR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcacgaagatgatggccgtgttggcggtgaatcacagtccaaacaagatgat
gaggaagctgctgctcgacttgaagaaattaagaaatcaatagaggcgaaagctgccctt
cgtcaaagcaatttgaatcctgaaaggcctgattctggattccttaggacattggattca
agcattaagcgtaatacagcggttattaaaaaattaaagcagataaatgaagagcagagg
gaagggctaatggatgagttgagaaatgtcaaccttagcaaatttgtcagtgaagccgta
acggcaatttgtgatgcaaaacttagaagttctgatatacaagcagcagttcagatctgc
tctttgcttcatcaaaggtacaaagatttttctccaagcctggtacaagggcttttgaag
gtcttttttcctggaaaatcaggggaagagttggacgtggacaggaactcaaaggctatg
aagaagcggagtactttgaaactgcttttggaactttactttgttggagttatagaagac
agcagtattttcatcaatattattaaggatcttactagtgtggaacacttgaaggatcgg
gatgctactcagacaaatctgactcttcttgctagttttgctcgacaagggagagttttc
ctaggactttccctctctggacaagagattcatgaagagtttgttaagggtcttaatatc
acaacagatcaaaagaaaatcttcaggaaagcctttaatacatattatgatgctgtatca
gaattacttcagtctgagcacacttctctgcgccaaatggagcatgaaaatgcaaagatt
ttgaatgctaaaggagagctcagtgatgaaaatgttgcttcatatgaaaagcttcgaaaa
tcttatgaccacttgtatcgcaatgtatcatctttggctgaagcccttgatatgcaacct
ccagtgatgccagaggatggccacacaactagggttaccactggggaggatgcttcatca
cctgctactgggaaagattcttctgttcttgaagctttatgggatgatgaagatactagg
gcattttatgaatgcttaccagatctcagagcatttgttccagcagtattattgggagaa
gcagagcccaaagtgaatgaacaatctgtgaagactcaagaacaaccaagtgaggtgcca
cctgagtctgaccaaggccaacctactcaagatactgctgagtcttctgcagacactggt
actgtgcaggaggggaaaagcattgagaaaggaaaggataaggatgaaaaggataaagaa
aaagctaaagatcccgaaaaagagaaaaataaagaaaaggatgctgagagaaaaggggaa
aatgaaaaggataaactcaaaggtcttgaagggacaagcttggatgctttactgcagagg
ctccctggttgtgtcagtcgtgatcttatcgatcaattgactgtagaattctgttattta
aattccaagtcaaatcggaaaaagctcgtaagggcattgtttaatgttcccaggacgtcc
ctagaactgctaccatactactcacggatggttgctacactatcaacttgtatgaaggat
gtctcttccatgctcttgcagatgttagaggaggagttcaatttcttgataaataagaag
gatcaaatgaatattgaaacaaagatcaggaatattaggtttctcggagaactgtgcaag
tttaaaatcgcgccacctggacttgtcttcagctgtttgaaggcttgtttggatgatttc
actcatcataacatcgatgttgcctgcaatcttcttgagacatgtggtcgttttctgtat
cgatctcctgaaactactgtacgtatggctaatatgctagagattttgatgcgcttgaaa
aatgtcaaaaatttagatcctcggcatagcaccctcgtagaaaatgcttactatttgtgc
aaaccacctgaaagatctgcacgagtgtctaaagtccgccctccattataccagtacatt
agaaaattgctattctcagatctagagaagtcttccattgagtatgtgctgaggcaactt
cgtaaactgccatggagtgaatgcgatgcataccttttgaaatgctttatgaaggttcac
aaggggaaatatggacaaattaacctaattgcttctcttactgctggtttgagccgttat
catgatgaatttgcagttgctgtagttgatgaggttctggaggagattaggcttgggctg
gaattaaatgactatggcatgcagcagaggcgcattgcccatatgcgatatttaggagag
ctttacaactacgaacttgtggattcctccgtaatttttgagacactctatttgatcctt
ggttttggccatgacacaccagagcgtgatgtactggatccaccagaggattgttttcgc
atcaggatggttatcactcttcttgagacctgtggacactacttcgaccgaggttcttct
aagaggaaacttgatcgatttttaatacattttcagcggtatattctcagcaagggagca
ctacctcttgacgttgaatttgatttacaggacttatttgcggatttacgccctagcatg
actcggtactcatccattgaagaagttaatgcagcgcttatagaacttgaggagaatgaa
cggacaggttccattgacaaggtcaataacgagaagcactatgacagcgaaaaaccttct
agcaggaatgcttccaatgccatctctgctaatggacaaaatattgtgaatggtaatgag
gaaaacggtggaattcatgaggacattggtgacactgacactgattcgggcagtggcacc
attgaccaagagggacatgatgacgaggacttagatgaagagaatcatgacgatgggtgt
gacacagaggaggacgaagatgatgatggaggtggacctgtttctgatgaggatgatgaa
gtccttgtcagacaaaaagtggctgaggtggacccagtggaagcagaaaattttgagcag
gagctaagggcagtaatgcaggagagcatggagcagcgcaggcaagagctgcggggtcgt
ccaatgataaatatggcgatacctatgaccatgtttgaaggatccactactcatggaagg
ggggtaggaggtgaaagtggtgatgaggcattggatgaggaggcaggaggaagtaaagag
gttcaggtgaaagtactcgtgaagcgtgggaacaagcaacagacaaaacagatgtccatt
cctagggattgctctcttgtccagagtacgaaacagaaagaagcagccgagtttgaagag
aaacaagatatcaagaggcttgtcttggaatacaatgatagagaggaagaggaaaataat
gggttgggaacccagacattgaactggatgcctagtggtagcaacagaactggcagccgt
ggcagtatgtgggaaggaagcagcagtagaggcactggatctcgtcatcggcatcagtat
cagcatcattcaggcagtggtgtttatcatggcagaagaaggtga
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integrated database retrieval system
