| Entry |
|
|---|
| Name |
(RefSeq) regulator of nonsense transcripts UPF2
|
|---|
| KO |
| K14327 | regulator of nonsense transcripts 2 |
|
|---|
| Organism |
rcu Ricinus communis (castor bean)
|
|---|
| Pathway |
|
|---|
| Brite |
KEGG Orthology (KO) [BR:rcu00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8281969
03015 mRNA surveillance pathway
8281969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rcu03019]
8281969
Messenger RNA biogenesis [BR:rcu03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
8281969
mRNA cycle factors
P-body specific factors
8281969
|
|---|
| SSDB |
|
|---|
| Motif |
|
|---|
| Other DBs |
|
|---|
| LinkDB |
|
|---|
| Position |
6:complement(27182950..27195764)
|
|---|
| AA seq |
1194 aa
MEQHEDDGRVGGESQSKQDDEEAAARLEEIKKSIEAKAALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKSGEELDVDRNSKAMKKRSTLKLLLELYFVGVIED
SSIFINIIKDLTSVEHLKDRDATQTNLTLLASFARQGRVFLGLSLSGQEIHEEFVKGLNI
TTDQKKIFRKAFNTYYDAVSELLQSEHTSLRQMEHENAKILNAKGELSDENVASYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGEDASSPATGKDSSVLEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKVNEQSVKTQEQPSEVPPESDQGQPTQDTAESSADTG
TVQEGKSIEKGKDKDEKDKEKAKDPEKEKNKEKDAERKGENEKDKLKGLEGTSLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
VSSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFLGELCKFKIAPPGLVFSCLKACLDDF
THHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLC
KPPERSARVSKVRPPLYQYIRKLLFSDLEKSSIEYVLRQLRKLPWSECDAYLLKCFMKVH
KGKYGQINLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQRRIAHMRYLGE
LYNYELVDSSVIFETLYLILGFGHDTPERDVLDPPEDCFRIRMVITLLETCGHYFDRGSS
KRKLDRFLIHFQRYILSKGALPLDVEFDLQDLFADLRPSMTRYSSIEEVNAALIELEENE
RTGSIDKVNNEKHYDSEKPSSRNASNAISANGQNIVNGNEENGGIHEDIGDTDTDSGSGT
IDQEGHDDEDLDEENHDDGCDTEEDEDDDGGGPVSDEDDEVLVRQKVAEVDPVEAENFEQ
ELRAVMQESMEQRRQELRGRPMINMAIPMTMFEGSTTHGRGVGGESGDEALDEEAGGSKE
VQVKVLVKRGNKQQTKQMSIPRDCSLVQSTKQKEAAEFEEKQDIKRLVLEYNDREEEENN
GLGTQTLNWMPSGSNRTGSRGSMWEGSSSRGTGSRHRHQYQHHSGSGVYHGRRR |
|---|
| NT seq |
3585 nt +upstreamnt +downstreamnt
atggagcagcacgaagatgatggccgtgttggcggtgaatcacagtccaaacaagatgat
gaggaagctgctgctcgacttgaagaaattaagaaatcaatagaggcgaaagctgccctt
cgtcaaagcaatttgaatcctgaaaggcctgattctggattccttaggacattggattca
agcattaagcgtaatacagcggttattaaaaaattaaagcagataaatgaagagcagagg
gaagggctaatggatgagttgagaaatgtcaaccttagcaaatttgtcagtgaagccgta
acggcaatttgtgatgcaaaacttagaagttctgatatacaagcagcagttcagatctgc
tctttgcttcatcaaaggtacaaagatttttctccaagcctggtacaagggcttttgaag
gtcttttttcctggaaaatcaggggaagagttggacgtggacaggaactcaaaggctatg
aagaagcggagtactttgaaactgcttttggaactttactttgttggagttatagaagac
agcagtattttcatcaatattattaaggatcttactagtgtggaacacttgaaggatcgg
gatgctactcagacaaatctgactcttcttgctagttttgctcgacaagggagagttttc
ctaggactttccctctctggacaagagattcatgaagagtttgttaagggtcttaatatc
acaacagatcaaaagaaaatcttcaggaaagcctttaatacatattatgatgctgtatca
gaattacttcagtctgagcacacttctctgcgccaaatggagcatgaaaatgcaaagatt
ttgaatgctaaaggagagctcagtgatgaaaatgttgcttcatatgaaaagcttcgaaaa
tcttatgaccacttgtatcgcaatgtatcatctttggctgaagcccttgatatgcaacct
ccagtgatgccagaggatggccacacaactagggttaccactggggaggatgcttcatca
cctgctactgggaaagattcttctgttcttgaagctttatgggatgatgaagatactagg
gcattttatgaatgcttaccagatctcagagcatttgttccagcagtattattgggagaa
gcagagcccaaagtgaatgaacaatctgtgaagactcaagaacaaccaagtgaggtgcca
cctgagtctgaccaaggccaacctactcaagatactgctgagtcttctgcagacactggt
actgtgcaggaggggaaaagcattgagaaaggaaaggataaggatgaaaaggataaagaa
aaagctaaagatcccgaaaaagagaaaaataaagaaaaggatgctgagagaaaaggggaa
aatgaaaaggataaactcaaaggtcttgaagggacaagcttggatgctttactgcagagg
ctccctggttgtgtcagtcgtgatcttatcgatcaattgactgtagaattctgttattta
aattccaagtcaaatcggaaaaagctcgtaagggcattgtttaatgttcccaggacgtcc
ctagaactgctaccatactactcacggatggttgctacactatcaacttgtatgaaggat
gtctcttccatgctcttgcagatgttagaggaggagttcaatttcttgataaataagaag
gatcaaatgaatattgaaacaaagatcaggaatattaggtttctcggagaactgtgcaag
tttaaaatcgcgccacctggacttgtcttcagctgtttgaaggcttgtttggatgatttc
actcatcataacatcgatgttgcctgcaatcttcttgagacatgtggtcgttttctgtat
cgatctcctgaaactactgtacgtatggctaatatgctagagattttgatgcgcttgaaa
aatgtcaaaaatttagatcctcggcatagcaccctcgtagaaaatgcttactatttgtgc
aaaccacctgaaagatctgcacgagtgtctaaagtccgccctccattataccagtacatt
agaaaattgctattctcagatctagagaagtcttccattgagtatgtgctgaggcaactt
cgtaaactgccatggagtgaatgcgatgcataccttttgaaatgctttatgaaggttcac
aaggggaaatatggacaaattaacctaattgcttctcttactgctggtttgagccgttat
catgatgaatttgcagttgctgtagttgatgaggttctggaggagattaggcttgggctg
gaattaaatgactatggcatgcagcagaggcgcattgcccatatgcgatatttaggagag
ctttacaactacgaacttgtggattcctccgtaatttttgagacactctatttgatcctt
ggttttggccatgacacaccagagcgtgatgtactggatccaccagaggattgttttcgc
atcaggatggttatcactcttcttgagacctgtggacactacttcgaccgaggttcttct
aagaggaaacttgatcgatttttaatacattttcagcggtatattctcagcaagggagca
ctacctcttgacgttgaatttgatttacaggacttatttgcggatttacgccctagcatg
actcggtactcatccattgaagaagttaatgcagcgcttatagaacttgaggagaatgaa
cggacaggttccattgacaaggtcaataacgagaagcactatgacagcgaaaaaccttct
agcaggaatgcttccaatgccatctctgctaatggacaaaatattgtgaatggtaatgag
gaaaacggtggaattcatgaggacattggtgacactgacactgattcgggcagtggcacc
attgaccaagagggacatgatgacgaggacttagatgaagagaatcatgacgatgggtgt
gacacagaggaggacgaagatgatgatggaggtggacctgtttctgatgaggatgatgaa
gtccttgtcagacaaaaagtggctgaggtggacccagtggaagcagaaaattttgagcag
gagctaagggcagtaatgcaggagagcatggagcagcgcaggcaagagctgcggggtcgt
ccaatgataaatatggcgatacctatgaccatgtttgaaggatccactactcatggaagg
ggggtaggaggtgaaagtggtgatgaggcattggatgaggaggcaggaggaagtaaagag
gttcaggtgaaagtactcgtgaagcgtgggaacaagcaacagacaaaacagatgtccatt
cctagggattgctctcttgtccagagtacgaaacagaaagaagcagccgagtttgaagag
aaacaagatatcaagaggcttgtcttggaatacaatgatagagaggaagaggaaaataat
gggttgggaacccagacattgaactggatgcctagtggtagcaacagaactggcagccgt
ggcagtatgtgggaaggaagcagcagtagaggcactggatctcgtcatcggcatcagtat
cagcatcattcaggcagtggtgtttatcatggcagaagaaggtga |
|---|
