Ricinus communis (castor bean): 8282017
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Entry
8282017 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8282017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rcu03041
]
8282017
03009 Ribosome biogenesis [BR:
rcu03009
]
8282017
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8282017
Spliceosome [BR:
rcu03041
]
Complex A
U1 snRNP components
U1 related factors
8282017
Complex B
8282017
Ribosome biogenesis [BR:
rcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
8282017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CoA_binding_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
8282017
NCBI-ProteinID:
XP_002523955
UniProt:
B9SD86
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All DBs
Position
2:complement(13140537..13147331)
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AA seq
559 aa
AA seq
DB search
MSYVPPHLRNSTATTTTTTTTTTITSSITLENDHSTKLSTSTWKSLSSTLSNGSRRTTAA
FTSPRTLSVPDPVLPQWTPSERVLRLNSQQVEDVRARLNIEVTVASGSPPAPAPIESFED
MCLNQNIMKDIAYHGYTRPTPIQVQAMTVSLSGRDLLACAETGSGKTAAFTIPMIQHCLA
QSPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLDSFRTAIVVGGTNIADQRSELRAG
VDIMVATPGRFIDHLQQGNTSLSRISFIVLDEADRMLDMGFEPQIREVLHNLPERHQTLL
FSATMPEEIETLAQEYLTTPVQVKVGKVSGLTANVSQVLKKVSESEKIDCLLGLLVEDAS
QAERADHPFPLTVVFVDRKARCDEVAEALVAQGLRAVALHGGRSQNEREAALHDFRSGST
DILVATDVASRGLDVTGVTHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFYTDRDLFL
VAQIKKAIADVKSGNTVAFATGKVARRKEREAAASQKEARNDLSKLLGPTSINIEDKYRF
MIASSNTKGEGVADSAWDD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtacctccacacctgagaaactccaccgccaccaccactaccaccaccacc
accaccaccattacttcctcaataacgctagagaatgatcacagcactaagctttctact
tctacttggaaatctctctcctccactttatccaatggctctcgccggaccaccgccgct
ttcacttcgccgagaaccttgtccgttcccgaccccgttttgcctcagtggacaccctcc
gaacgcgttcttcgcttgaactcgcagcaggttgaagatgtccgtgcacggcttaatatt
gaagttactgttgcttcaggctcccctccggcgcctgctccaattgaatccttcgaggat
atgtgtttgaaccaaaacattatgaaggacattgcgtatcatggatatactaggccgact
ccaattcaggttcaggccatgactgtttctctcagtggaagagatctgttagcttgtgct
gaaactggtagtggcaaaacagctgcattcaccattcctatgatacagcactgtttggct
caatctcccattcgacgtggtgatggaccactagcactggttttagctcctactagagag
ctggctcaacagattgaaaaagaggtcaaatgttttagtaggtctcttgactccttcagg
actgcaatagttgttggtggaacaaacattgctgaccagaggtctgagctacgagcagga
gtggatataatggttgctactcctggaagatttattgaccatttacaacagggaaacact
tccctttctagaatttcatttattgttctggatgaagcggatagaatgcttgatatgggg
tttgaaccacagattagagaggtactgcataaccttccggaaaggcatcaaactttgctg
ttcagtgcaactatgccagaggagattgagacactagcccaggagtatttaactacccct
gtacaagttaaggttggaaaagtgagtggcctgacagcaaatgtctctcaagttttaaaa
aaggtttctgaaagtgagaagattgattgccttctcggtttactagtggaagatgcatct
caggctgaaagagctgatcatccgtttcctttaactgttgtatttgtggataggaaggca
aggtgtgatgaagttgctgaagctctggtagcacaaggtttacgagcagttgcacttcat
ggtggccgtagtcagaatgaaagggaggctgctttgcatgattttaggagtggctcaact
gatattctggttgccactgatgttgcatctcgtggcttagatgttacaggagttactcat
gtgattaatctcgatcttcctaagacaatggaagattatgtacatcgagttggaaggaca
ggtcgtgcaggatcagctggccaagctacttcattttacactgatcgtgatctgttccta
gtggcacaaattaagaaagcaatagcagatgttaaatcggggaatacagtggcttttgca
actgggaaggttgcaagaaggaaagagagagaagcagcagcttcacaaaaggaagccagg
aatgatctgtccaagttactaggacccacttcaataaacatcgaagataagtataggttt
atgattgcgtcttcaaacaccaaaggagagggtgtagctgatagtgcttgggatgattga
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