Ricinus communis (castor bean): 8282018
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Entry
8282018 CDS
T01087
Name
(RefSeq) TATA-binding protein-associated factor BTAF1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
rcu
Ricinus communis (castor bean)
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rcu03021
]
8282018
Transcription machinery [BR:
rcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
8282018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_ECM29
TOR1L1_N
HEAT_EZ
HEAT_2
TPR_Trm732_C
UTP20
RIX1
Motif
Other DBs
NCBI-GeneID:
8282018
NCBI-ProteinID:
XP_048226169
LinkDB
All DBs
Position
10:complement(9240673..9266130)
Genome browser
AA seq
2044 aa
AA seq
DB search
MAQQSSRLHRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLSSLLKKVSQYLRSKNWDT
RVAAAHAIGAIAQNVKHTSLAELFASVEAKMSEVGMSGVVEDLVAWPDFLSKIISSGSFR
SFEINKVLEFGALLASRGQEYDIANDNSKNPRERLARQKQNLRRRLGLDVCEQFMDVNDV
IKDEDLLVQKLHSQGNGLGNRFYMPPSVHNIQQLVASMVPTVVSRRPSARELNLLKRKAK
INSKDQTKGWSEDGDAEMSFSQSTTPKASNQDSFNSSKVDADEDSFEHDGDGKWPFRGFV
EQLMLDMFDPVWEVRHGSVMALREILTHHGGSAGVFMPDLSLDGALDELKYLDYSSTLKR
EREFDLNMQVSIDELEPHLKRPKFEEASSLLADTVLSTGCVENSDISVKVEDNGCTMPVG
QDNGQVDVTPIKMECGSCPDGISCSSKVVADIEEQKDYSVDKGSLVRSSILNNLPENCEL
MNLVKLGRHSWMKNCEFLQDCAIRFLCILSLDRFGDYISDQVVAPVRETCAQALGAAFKY
MHRSLVHETLNILLQMQRRPEWEIRHGSLLGIKYLVAVRQEMMPDLLGYILPACKAGLED
PDDDVRAVAADALIPTAGAIVSLKGQMLHSIIMLLWDILLDLDDLSPSTSSVMNLLAEIY
SQEAMLPKMTAKEKQELDLNEVIHVDDAVEGKDLQESPYMLSTLAPRLWPFMRHSITSVR
YSAIRTLERLLEASYKRNNSEPSDTSFWPSFILGDTFRIVFQNLLLESNEEILLCSERVW
RLLVQCPVEDLEAAANSYMHSWIELATTPYGSPLDSTKMFWPVALPRKSHFRAAAKMRAV
KLENESWRNTGLEYGKEDTPQERNGDPSSIVKIIVGADVEISVTNTRVITASALGIFASK
LREDSFKYVIDPLWNALMSLSGVQRQVASMVLISWFKEIKCNEYSESHAVLPAFPNHVEK
WLLDLLSCSDPAFPTKDSIHPYSELSRTYTKMRNEASQLLRAIESSGMFESTLSTVKVDL
ESLTADGAIDFASKLSPLCNDITGNELVGQNIVDEIESPKHRLLTTAGYLKCVQNNLHVT
VSALVAAAVVWMSELPARLNRIILPLMASIKREQEEILQHKAAEALAELIYRCIERKPGP
NDKLVKNICSLTCMDPCETPQASIISSMDIIDDQDFLSFGSNTAKQKSKVHTLGGGEDRS
KFEGFISRRGSELALKYLCEKFGASLFDKLPKVWDCITEVLIPGSPADEQQIARSIESVK
DPQILINNIQVARSVAPLLDETLKPKLLTLFPCIFKCVRHSHVAVRLAASRCITSMAKSM
TLNVMAAVVENAIPMLGDVTSVHARQGAGMLISLLVQGLGVELVPYAPLLVVPLLRCMSD
NDHSVRQSVTRSFAALVPLLPLARGLPPPSELNKGLMRSAEDAKFLEQLLDNSHIDDYKL
CTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAERCTLNNS
EDVQTSLIVCPSTLVGHWAFEIEKYIDVSLISTLQYAGSAQERTNLREQFDKHNVIITSY
DVVRKDIDFLGHFLWNYCILDEGHIIKNAKSKITAAVKRLKAQHRLILSGTPIQNNIMDL
WSLFDFLMPGFLGSERQFQATYGKPLLAARDAKCSAKDAEAGALAMEALHKQVMPFLLRR
TKDEVLSDLPEKIIQDRYCDLSPVQLKLYDQFSGSHVKQEISSMVKVDDSACREGNSASP
KASSHVFQALQYLLKLCSHPLLVLGEKMHESLASQLAGILPANSDIISELHKLHHSPKLV
ALQEILEECGIGVDISSSENAVNVGQHRVLIFAQHKALLDIIERDLFHSHMKNVTYLRLD
GSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMD
RAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLDLF
ASAETNTKGSTALKRSDGNSDGDPKLMGTGKGLKAILGGLEELWDQSQYTEEYNLNQFLA
KLNG
NT seq
6135 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaatcttcgcgtctccatcgattgctcactttattagacactggttcgact
caagcaactaggtttactgcggcaaggcaaattggggatattgcgaaatcacatcctcag
gatttgagttctcttttgaagaaggtttctcaatatctccgaagtaaaaactgggataca
agagttgctgctgctcatgcgattggggctattgctcagaatgtcaagcacacatctttg
gctgaattatttgcttctgtagaagcaaagatgtccgaggttgggatgtcaggtgttgtt
gaggatttggtcgcatggcctgattttctttctaagatcatttcaagtggctcctttaga
agttttgagataaataaagtgttggagtttggtgctttattggcttctaggggacaggaa
tatgatattgcaaatgataattccaagaatccaagggagcgattagctcgccagaaacag
aatttgcgacgccgcctgggtttggatgtttgcgagcaatttatggatgtgaatgatgta
attaaagatgaagaccttcttgtccaaaaattacactcccaaggaaatggtttgggcaat
agattttacatgcccccatctgtgcataacatccagcaacttgttgcaagtatggtcccc
actgttgtttctagaagaccaagtgcaagggaactgaatcttttaaagcgaaaagcaaaa
ataaactcaaaagatcaaacaaaaggttggtcggaggatggagatgcagagatgtcattt
tctcaaagtacaactccaaaggcctcaaatcaagattcatttaactctagcaaggtagat
gctgatgaagacagttttgagcatgatggagatgggaagtggccttttcgtggctttgtt
gaacaacttatgctggacatgtttgaccccgtttgggaagttcgtcatggtagtgtcatg
gcactgagagaaattttaacccatcacggtggctctgctggggtatttatgcctgacttg
agcttggatggtgctttagatgaattaaagtatctagattactcaagcactttgaagaga
gagagagaatttgatttgaatatgcaagtttccatagatgagttggagccacatctcaaa
aggccaaaatttgaagaagcatcatctctattagcggatacagtgctctctactggctgt
gttgagaactctgacatcagtgtcaaggtggaagataatggatgtactatgcctgtagga
caggataatggccaagttgatgttactcctattaagatggaatgtggtagttgccctgat
ggtatatcttgttcatctaaagtagttgctgatatagaggagcagaaggattactctgta
gataagggttctcttgtgagatcaagcattttgaacaatcttcctgaaaattgtgagctg
atgaacttggttaaacttggtaggcattcatggatgaaaaattgtgaatttcttcaagat
tgtgcaattcgtttcttgtgcatactatcattggatcgctttggagattatatctcggac
caagttgttgctccagtgcgtgaaacgtgtgctcaagcattaggtgctgcatttaagtac
atgcatcgctctttagttcatgaaacattgaacatcctgcttcaaatgcagcgtagacca
gaatgggaaattcgtcatggaagtcttttgggtatcaagtatttggttgctgttcgtcag
gagatgatgcctgatttacttggctacattttgcctgcttgtaaagctggactggaggac
cctgatgatgatgttagggcagttgctgcagatgctttaatacctactgctggtgctatc
gtttctctaaagggacaaatgttgcattccattattatgctactctgggatatattactt
gatttagatgatctaagtccatccacaagcagcgtgatgaatctgttggcagaaatttat
tcccaggaagctatgcttcctaagatgacagcgaaagagaaacaagagctagatttgaat
gaagtaattcatgttgatgatgctgtagaaggaaaagatctgcaggagagtccttacatg
ttatcaacattggcaccccgattatggccatttatgaggcacagtatcacatcagttaga
tattcagctattcgaactctggagcgactacttgaagctagttataaaagaaacaattct
gagccatctgatacttcattttggccctcttttattttgggagatacctttcgcattgtt
tttcagaatctgctgcttgaatcaaatgaagaaattttgctttgttcagagagggtttgg
aggctccttgttcagtgcccagtggaggacttggaagctgctgcaaattcatatatgcat
tcttggattgaacttgcaactactccatatggttcccccttagattcaacaaagatgttt
tggccagtggctttacctagaaagtctcattttagagcagcagctaaaatgagagctgtg
aaacttgaaaatgagtcttggagaaacactggtttagaatatgggaaagaagatactcca
caggaaagaaatggggatccttctagcattgttaaaatcattgttggcgctgatgttgaa
atttcagtcactaatactcgagtcattacagcatctgcattgggaatttttgcttcgaag
ttgcgcgaggattctttcaaatatgtaatagatccactgtggaatgctcttatgtcttta
tctggggtccagcggcaggtggcatcaatggttcttatttcatggtttaaagagatcaaa
tgcaatgaatactctgaaagccatgcagttctacctgcttttccaaatcatgtcgagaag
tggttgttggatttgttatcctgttctgaccctgcatttcctacaaaagattcaattcat
ccttattctgaactgtcaaggacctatacaaagatgcgcaatgaggccagccagttgtta
cgtgccattgagtcatctggcatgtttgagagtacattatctactgtcaaagtagatctc
gagagcttgactgctgatggagcaatcgattttgcttcaaagttgtctccattatgtaat
gatattactgggaatgaattagtgggacaaaacattgtggatgaaattgaatcaccgaaa
caccgacttctgacaactgcaggctatttaaaatgtgtccagaacaacttgcatgttact
gtttctgctttggttgccgcagctgttgtgtggatgtcagagcttcctgcacgacttaat
cgaatcattttgcctctgatggcctcaatcaaacgagagcaggaggaaatattgcaacac
aaggctgctgaagcccttgctgagttaatatatcgttgtattgaacgtaaacctggtcca
aatgataagttagtcaagaatatttgtagtttgacatgcatggatccttgcgagacacct
caagctagtatcatcagttccatggacattattgacgatcaagattttctttcctttggg
agtaacacagcaaaacaaaagtcaaaggttcatacgctaggtggtggggaagacaggtca
aaatttgaaggctttatcagtagacggggatctgaacttgcattgaagtatttgtgtgag
aaatttggggcttccttatttgacaagcttccaaaagtatgggattgcattacagaagtt
ctgatacctggcagtcctgcagatgaacaacagatcgcaagaagtattgagtctgtcaag
gatcctcaaatcctcataaataatattcaggtagcacgctctgttgctccattgctggat
gagacattgaagcctaagttgctcacacttttcccatgcattttcaaatgtgttcgtcat
tcccacgttgctgttagattggctgcttctagatgtattacttcaatggccaagtcaatg
acattgaatgtcatggctgcggttgttgagaatgccattccaatgttaggagatgtcact
tctgtacatgccagacaaggtgctggcatgctcatcagtttacttgttcaaggattgggc
gtggagctggtcccatatgctcctttattagttgttcctcttcttcggtgcatgagtgat
aatgatcattctgttaggcagagtgtgactcgcagttttgctgcccttgttcctcttctg
ccattggcaagaggtctaccccctcctagtgaattgaacaagggtctgatgcggagtgca
gaagatgccaaatttttggagcaattgcttgacaattcacatattgatgattacaagctt
tgcactgaattgaaggtgacattaaggaggtatcaacaagaaggtataaactggttggct
ttcttaaaacgtttcaagcttcatggcatcctttgtgatgatatgggacttggtaagaca
ttacaggcatcagcaattgttgcatctgatatagcggaacgttgcactttgaataacagt
gaggatgttcaaacatctttaattgtttgcccttcaacactcgttggacactgggccttc
gagatagagaagtatattgatgtttctctaataagcaccctacaatacgccggttctgct
caagagcgcacaaacctaagagaacagtttgataagcataatgttatcattacctcttat
gatgtggttcgcaaagatattgatttccttgggcattttttatggaattattgtattttg
gatgaagggcatataataaagaatgcaaaatctaaaattacggctgcagtgaagaggttg
aaagctcaacatcgcctgatacttagtggaacaccaatccagaataacatcatggatctg
tggtctctctttgactttctaatgccagggtttcttggttctgagagacaattccaagcc
acttatgggaagcctttacttgctgctagagatgctaaatgttctgccaaggatgctgaa
gctggggcacttgctatggaagcattgcacaagcaggtcatgccttttctcctccggcgg
acaaaagatgaagttttatcagacttgccagagaaaattattcaagatagatattgtgac
ctaagccctgtccagttaaaactctatgatcagttctcaggttcacatgttaaacaggag
atttcaagtatggtaaaagtagatgattcagcatgtcgtgaaggaaatagtgcttctcca
aaagcttcttcccatgtttttcaggcactccagtacttgctaaaactatgcagtcatcca
ttgcttgttcttggtgaaaagatgcatgaatcactggcatctcagttggctggaatcttg
ccggcaaattctgacataatctcggaattacataagctgcaccactctccaaaattggtt
gcccttcaggaaattctggaagaatgcggtataggtgtagatatttcgagttccgagaat
gctgtgaatgttggccagcatagggttttgatatttgctcagcacaaggcccttcttgac
atcattgaaagagacttgtttcactcccatatgaagaatgtcacgtacctacggctggat
ggatcagttgaaccagaaaaacgttttgacatagtaaaagcttttaattcagaccctact
attgacgccttgttgcttacaacacatgttggtggccttggtttgaatctgacatctgct
gacacccttgttttcatggagcatgattggaatccaatgcgtgatcaccaggccatggac
agagcacacagattaggtcaaaagaaagttgtaaatgtccatcgtctcatcatgcgtggc
acacttgaagagaaagttatgagtctccaaaagttcaaagtatcagttgccaatgctgtc
atcaatgcagagaatgccagcctgaaaacgatgaatacagaccaattgcttgatttgttt
gcatcagctgaaaccaatacaaagggaagtacggcattgaagcgctcagatggcaactct
gatggagatcctaaactaatgggcactgggaaggggttaaaagccatccttggggggcta
gaggagctctgggatcaatcacagtacactgaggaatacaatctaaaccagttcttggcg
aagctgaatgggtga
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integrated database retrieval system
