Ricinus communis (castor bean): 8282163
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Entry
8282163 CDS
T01087
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8282163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rcu03036
]
8282163
Chromosome and associated proteins [BR:
rcu03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
8282163
SWR1 complex
8282163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
HDA2-3
DBINO
CpxA_peri
Motif
Other DBs
NCBI-GeneID:
8282163
NCBI-ProteinID:
XP_015577402
LinkDB
All DBs
Position
9:complement(23242570..23261478)
Genome browser
AA seq
2045 aa
AA seq
DB search
MDFNSKEGVHRKRKKALEAPKELRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVAL
RASKGMLDQATREERKLKEEEQRMRKVALNISKDVKKFWIKIEKLVLYKHQMELDEKKKK
ALDKQLEFLLGQTERYSTMLAENLGDKSLLQHSILDQPSISYEKGHKCDTKEPAELVDAI
PDPQLDTADNDDDYDVQSDESEDDERTIDQDEALITEEERREELAALHNEIDIPLVELLK
RYAALKVSRENTPERGENGADLSVEEGGPAESKENSISADSDTEMSSSPVDTGRRCGKVN
GALLMKDNCLLETEMGESKNQPDTSLDPAKEHALFDFNEEQEDGDFVLVNGEEKDDETTL
SEEEELEKDDPTNPKNEILLLQKESEMPLIELLARYNEEFNNEVSEDESEYTSALSDNLL
DSPDKQDVELRQQDVSMDENVEPGKSLPVLDHSVNEQERNEKIAEEGNESENRIADAAAA
ARSAQPTGNTFSTTKVRTKFPFLIKYPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKT
IMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQ
GWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRR
ILLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKEWFSNPISGMVEGQERVNKEVVDRLH
NVLRPFILRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASASFFGM
ISIIMQLRKVCNHPDLFEGRPIISSFDMIGIDFQLNSSVCSMLSPGPFSSVDLSGLGLLF
THLDFNMTSWECDEINAIATPSRLIEERANIDSIEEIGPQSKQRKRLPGTNIFEEIRKAL
FEERLREARERAASIAWWNSLRCRKKPIYSTNLQELLTIKNPVDDIYCQKVDRVSYLYSS
KLADVILSPVERFHRMTDLVESFMFAIPAARAPVPTCWCSKTGSSVFLHPTYKEKCSELL
LPLLSPIRPAIIRRQVYFPDRRLIQFDCGKLQKLAVLLRRLKSEGHRALIFTQMTKMLDI
LEAFINLYGYTYMRLDGSTQPEQRQTLMQRFNTNPKIFLFILSTRSGGVGINLFGADTVI
FYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSG
GYNTEFFKKLDPMELFSGHKALPAKNAQKEKILSHGNEDSLSNADVEAALKYAEDEADYM
ALKKVEQEEAVDNQEFTEAIGKLEDDELVNDDDLKADEPTDLEMTIQNKDSGTDLNAKDS
TDERTLTFAAKGDDVDMLADVKQMAAAAAAGGQAISTLENQLRPIDRYAIRFLELWDPII
DKAAMECEVRFEEAEWELDRIEKYKEEMEAEIDDDEEPLIYETWDADFATEAYRQQVEAL
AQHQLMEELEAEANEKENADDGYCDPMIRIDMPSNPKPKSKKKPKKAKFKSLKKGSLTSE
LKHVKEEPSVESMSIEDDASYHEEVSAVQRKRRRVETLDIELGKSSKKKSNKLKKAPETC
LSDLDSNLSGKQQDDSMESKPCENMVADIEQKPAGRSKMGGRISITAMPVKRVLMIRPEK
LKKGNVWSRDCVPPPDSWLPQEDAILCAVVHEYGPHWSLVSETLYGMTAGGFYRGRYRHP
VHCCERFRELIQRYVLSTPENPINEKACNTGSGKALLKVTEDNIQKLLNFATEQPDHELL
LQKHFTALLSSVWRMTSRTDRQPHFSSSRNGLYFGGRLFSSFNQISLNSMKEPAKRMRIT
NLSESSRLLASALHEANSRPMDDTVSILNRMENVPSTSEQLEITLEFEKEETDSLVPLPP
VINLSIPLSDSQRFITKDVGEENRIKASMNVAESRFRDAARACDEGGLGWASSAFPANDI
KLRPGPKPQSLGKHKPSLPDTVKPPRSKLKRTSEHGEIHQHLLAEPVFQSPHAVSPRDPN
LKFDLTPAVLQDGWTNDTYGYSISCFDNELSLEIGSLEAVPHNYVPDLISGLDDCSLLPE
FTDIG
NT seq
6138 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaattccaaggaaggcgtgcataggaagagaaaaaaggcactcgaagctcct
aaagaacttcgtcgtcctaagactcattgggatcatgttttggaagagatggtctggttg
tcaaaggattttgagtctgagagaaaatggaaattggctcaagcaaagaaagttgctttg
agagccagcaaggggatgttggatcaggccaccagagaagaaaggaaactgaaggaagag
gaacaacgtatgcgcaaagttgcacttaatatttcgaaggatgtgaagaagttctggatt
aaaatagagaagctggtactttacaagcatcagatggagcttgatgaaaaaaagaaaaag
gctcttgataaacagctggagttccttctaggacaaactgagaggtactctaccatgttg
gctgaaaatctaggtgacaaatcattgctgcaacattctatactggatcaacccagtatt
tcatatgagaaagggcataaatgtgatactaaagaaccagcagaattagtcgatgctatt
ccagatcctcagttggatactgcagacaatgacgatgattatgatgtgcaatcagatgaa
tcagaagatgatgagcgtaccatagatcaagatgaagctcttataactgaagaggaaaga
cgagaagaattggctgctctacacaatgagattgatattccacttgtggagctacttaaa
cgatatgctgcgctgaaagttagcagagaaaatactccagaaaggggtgaaaatggagcc
gacctgtcagttgaggagggaggtcctgctgagagcaaagaaaacagcatttctgctgac
agtgacactgaaatgagcagctcacctgtcgatactggtcgtcgttgtggtaaagttaat
ggtgctttgctcatgaaagataactgtctactggaaactgagatgggtgaaagtaaaaat
cagcctgatactagtcttgaccctgcaaaagaacatgcattatttgatttcaacgaggaa
caggaagatggagattttgttcttgttaatggtgaagaaaaggatgacgagacaaccttg
tcagaggaggaagaactggaaaaagatgatccaactaatcccaaaaatgagattttactg
ctacaaaaggagagtgaaatgcctctaatagaattgcttgccaggtataacgaggagttc
aacaatgaagtatccgaggatgaatctgaatatacatctgctttatcagacaacttattg
gactctccagacaaacaagatgttgagctgaggcagcaggatgtatctatggatgaaaat
gtcgaacctggtaaatccttaccagttttagatcattctgtaaatgaacaagaaagaaat
gagaaaattgcagaagaaggaaatgagagtgagaataggattgctgatgctgctgctgct
gcaagatctgcgcagcctacgggtaatacgttctcaacaaccaaagtgcgcacgaagttc
ccttttcttatcaagtaccctcttcgtgagtatcaacatattggccttgattggcttgtc
actatgtatgagaaaaggttaaatgggattctagctgatgaaatgggacttggaaagaca
ataatgactattgctttacttgcacacctggcatgtgagaagggaatatgggggccccat
ctaattgtggttccaacaagtgtcatgcttaactgggaaacagaatttctcaaatggtgt
cctgcttttaagattcttacttactttggcagtgcaaaagagcgtaaactgaagaggcaa
ggttggctgaaaccaaactccttccatgtgtgcattacaacttataggctggttatacag
gattcaaaagttttcaagaggaagaagtggaagtacttgattttggatgaagctcatctg
ataaaaaattggaagtcccagagatggcaaactcttttaaacttcaattcgaaaaggcga
atcttattaaccggtactcctttgcagaatgatctcatggaactctggtctttgatgcat
ttcttgatgccccacatctttcagtctcatcaggagttcaaggaatggttcagtaatcca
atatcaggtatggtggagggacaagaaagagtgaacaaagaagttgttgatcgtctgcat
aatgttcttcgtccatttatacttcgtcgattgaaaagggatgtggaaaagcaacttcct
atgaaacacgagcatgtcatatactgtagactttcaaagaggcagcgtaacttgtacgag
gacttcattgctagctcagagacgcaggctacccttgccagtgctagcttttttggaatg
attagcattataatgcaacttcgtaaggtttgtaatcatcctgacttatttgagggccgt
ccgattattagctcctttgatatgattggtatagacttccagctgaattcttctgtatgt
tcaatgctttcacctggcccattttcatctgtagaccttagtggcttggggcttttgttt
acacatcttgattttaacatgacttcatgggagtgtgatgaaataaatgctattgcaact
ccttcaagattaatcgaagagcgtgctaacattgatagcattgaagaaattggtcctcaa
tctaaacaacggaaaaggttacctggaacaaatatttttgaagagattagaaaggcattg
tttgaggagagactaagagaagcaagggagcgggcagcatctattgcatggtggaattcc
ttgaggtgccggaaaaaacccatatattctacaaacttgcaagaacttctcaccataaag
aatcctgttgatgatatttattgccaaaaggttgatcgggtctcttatttgtactcatcc
aagcttgctgatgttattctttcaccagttgaacggttccacaggatgactgatcttgtt
gagtcgtttatgtttgctatacctgcagcacgtgctccagtacctacatgttggtgcagt
aaaacagggagctctgtgtttctgcatccgacttataaagagaagtgctctgaattgtta
ttacctcttctttcacctattagacctgcaattatcaggaggcaagtgtatttcccagac
agacggctaatacagtttgactgtggtaaattgcagaaacttgcagttctgctaaggaga
ctgaaatcagaaggtcaccgagcattgatattcacacagatgacaaaaatgcttgatata
ttggaggctttcataaacttgtatggttacacttacatgcgtttagatgggtctactcaa
ccagaacagaggcaaacattaatgcagcgatttaacacaaatcctaagatctttctcttt
attttgtcaacccgtagtggcggagttggcataaatctttttggagccgatacagttatc
ttttatgatagtgattggaaccctgcaatggatcaacaagctcaagatcgctgccaccgg
atagggcagacacgtgaagttcatatctacaggttaattagtgagagcactatcgaagaa
aacatcttaaagaaagctaatcagaagcgtgctcttgatgatctggtaatacagagtgga
ggctacaacaccgagtttttcaagaagcttgatcctatggaattattctctggtcataaa
gctcttccagctaaaaatgcacagaaggaaaaaattctaagccatggaaatgaggattct
ttgtctaatgcagatgtggaggctgctttgaaatatgcagaagatgaagcagattatatg
gcattgaagaaagttgaacaggaagaagctgtggacaaccaagaatttactgaggccatt
gggaaattggaagatgatgaacttgttaatgatgatgatttgaaggctgatgagcctaca
gatctagagatgacaattcaaaataaagatagtggtacagacttgaacgcaaaggattcc
actgatgaaagaactctaacttttgctgccaaaggagatgatgttgacatgcttgctgat
gttaaacaaatggctgcagcagcagcagctggtggacaagctatctcaacacttgagaat
cagctgcgtcctattgacagatatgctatacgttttttggaattgtgggacccaattatt
gacaaagcagccatggaatgtgaagttaggtttgaggaggcagaatgggaacttgatcga
attgagaaatacaaagaggagatggaggctgagattgatgatgatgaggaaccattgata
tatgaaacttgggatgctgattttgcaactgaagcatatcgacagcaagttgaggcccta
gctcaacatcagttgatggaagaactggaagctgaagctaatgagaaggaaaatgcagat
gatggttattgtgatccaatgatcaggattgacatgccaagtaatcctaaaccaaagtcg
aaaaagaaaccaaagaaagccaagttcaaatctctgaagaaaggatctctcacttctgaa
ttgaaacatgtgaaagaggaaccatcagtggaaagtatgtccatagaggatgatgcaagt
tatcatgaggaagtctcagctgtgcagagaaaacgtaggagagttgaaacacttgatatt
gaattgggcaagagctcaaagaagaagtcaaataaattaaagaaggctcctgaaacatgc
ctttcggatctagattcaaatctgtctggtaagcagcaagatgattctatggaatcaaaa
ccatgtgagaacatggttgctgatattgagcagaaaccagctggcagaagcaaaatggga
ggaaggatctctatcactgccatgccagtgaagcgggtcttaatgattaggcctgagaag
ttaaagaagggaaatgtttggtcaagagattgtgttcccccaccggattcatggttgccc
caggaagatgcaattttatgtgctgttgtgcatgaatatggaccacattggagcttagtg
agtgaaaccttatatggtatgactgctggtggattttataggggaagatatcgtcatccg
gttcattgttgtgagagatttagggaactaatccaaagatatgttttgtccacaccagaa
aatcctattaatgaaaaggcgtgtaatacaggttctggaaaggcccttctgaaagtcacc
gaggataatattcagaagttgttaaattttgctactgagcagccggatcatgagttgctt
ctccagaagcatttcactgccctgctttcttcagtgtggaggatgacatcacgcactgat
cgccaaccacacttttcatcatctagaaatggcctttattttggtggaaggttattcagt
tctttcaatcagatatcattgaattctatgaaagaacctgcaaaaagaatgaggatcact
aatttatcagagagtagtaggttgttggcatctgcgctccatgaagccaatagtagaccc
atggatgacacagtctcaattttgaacagaatggagaatgttccttctacttctgaacag
ttggaaataacactggaatttgaaaaggaggaaactgattccttggttccattgccacct
gttataaatttgtcgatacctttgtccgactcgcaaaggttcataaccaaggatgtagga
gaagaaaatcgtattaaagcctccatgaatgtggctgagagtcgattcagggatgcagca
agagcttgcgatgaaggcggtttgggatgggcttcgtctgcattcccagcaaatgatatc
aaactgcggccaggtccaaaaccacagtccttgggaaagcataagccatctctccctgat
acagtcaagccacctagatcaaaactgaagagaacttcagagcacggtgagattcatcaa
cacctacttgccgagccagtattccaatcaccacatgcagtgtcccccagggatcccaat
ttaaagtttgaccttactccagctgtccttcaggatggttggacgaatgatacatatggt
tattctatttcttgtttcgataatgagctttcattggaaatagggagcctggaagctgtc
cctcataattatgttcctgatttaatttctggcctggatgattgttcattattgccagaa
tttactgatattgggtag
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integrated database retrieval system
