Ricinus communis (castor bean): 8282320
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Entry
8282320 CDS
T01087
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03013
Nucleocytoplasmic transport
rcu03015
mRNA surveillance pathway
rcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8282320
09122 Translation
03013 Nucleocytoplasmic transport
8282320
03015 mRNA surveillance pathway
8282320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8282320
03041 Spliceosome [BR:
rcu03041
]
8282320
Enzymes [BR:
rcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8282320
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
8282320
Spliceosome [BR:
rcu03041
]
Complex C
Other components
EJC/TREX
8282320
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
8282320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
YihI
Motif
Other DBs
NCBI-GeneID:
8282320
NCBI-ProteinID:
XP_002517619
UniProt:
B9RV50
LinkDB
All DBs
Position
8:complement(10291293..10296436)
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AA seq
427 aa
AA seq
DB search
MEEVKDTEAYEEELLDYEEEEEKAPDSVSAKAADTAKKGYVGIHSSGFRDFLLKPELLRA
IIDSGFEHPSEVQHECIPQAILGMHVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVL
CHTRELAYQICHEFERFSTYLPDLKVSVFYGGVNIKIHKDLLKNECPHVVVGTPGRILAL
ARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPYDKQVMMFSATLSKEIRPVC
KKFMQAPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLMECNFPSICIHSGMSQEERLTKYKNFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagttaaagataccgaggcttacgaggaggagctactcgactacgaggaagaa
gaggaaaaagcccctgactctgtctctgctaaagcggctgatactgctaaaaagggatat
gttgggatacacagttcaggtttcagagacttcctactgaagccagagcttctacgagcc
attatagattctggatttgagcatccttcagaagtgcaacacgagtgcatccctcaagca
attctaggaatgcatgtcatatgccaagcaaaatctgggatgggaaagactgccgtattt
gttttatccactctgcagcagattgatcctgttgcaggtcaagttgctgcgctcgttctt
tgccatacaagagaattagcatatcagatatgccatgaatttgagaggttcagtacatat
ttgccggatttaaaggtttctgtcttctatggcggtgtcaatatcaagattcacaaggat
ttacttaaaaatgaatgccctcatgttgttgttggaactcctggaagaatattggctctg
gccagggataaagatcttggattgaagaatgtgagacattttatcctggatgagtgtgac
aagatgcttgaatcacttgatatgaggagagatgtgcaggagatcttcaagatgactcct
tatgataagcaagttatgatgttttcagctacacttagcaaggaaattcgtcctgtttgc
aagaaatttatgcaagctcctatggaaatttatgtagatgatgaggccaagttgactctt
catggtcttgtacagcactacattaaattgaccgagctggagaaaaatcgaaagttgaat
gacctgcttgatgccttggatttcaaccaagttgtcatctttgtcaaaagtgtgagcaga
gcagctgagctgaacaagttattgatggagtgtaacttcccctctatatgtattcactct
ggaatgtctcaggaagaacggttgacaaagtataagaattttaaggaggggcacaaaaga
attcttgtagcgactgatttggttggaagaggaattgatattgaacgtgttaacattgtt
atcaactatgacatgcctgattctgctgatacctatttgcacagggtgggaagagctggt
aggtttgggaccaagggccttgcaattacattcgtctcctctgcatcagactcagatgtt
ctgaatcaagttcaagccaggtttgaggtggatattaaggagctccctgagcagattgat
acttccacatatatgccatcgtga
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