Ricinus communis (castor bean): 8282693
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Entry
8282693 CDS
T01087
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
8282693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rcu03400
]
8282693
Enzymes [BR:
rcu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
8282693
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
8282693
DNA repair and recombination proteins [BR:
rcu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
8282693
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
Motif
Other DBs
NCBI-GeneID:
8282693
NCBI-ProteinID:
XP_002517673
UniProt:
A0ACK6B4A5
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All DBs
Position
8:complement(10629932..10635063)
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AA seq
403 aa
AA seq
DB search
MPELPEVEAARKAIEENCLGKKIKKAIIASDAKVIDGVSPSDFEAALVGKTLISAHRKGK
NLWLQLDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVNDTDEWPSKYSKLFVELDDGLEL
SFTDKRRFAKVRLLNNPVSVPPISELGPDALLQPMAVDEFYKSLCKKKMPIKALLLDQSF
ISGIGNWIADEVLYQARIHPQQSASSFTKESCATLLKCIKEVIEKAIEVEADSSQFPNSW
IFHSREKKPGKAFIDGKKIDFITSGGRTTAYVPELQKLSGNQISKRRNSEDNNDDNGVEG
EDAASNAASLEDGAAKKAKPKRELKPRGRGKKPPPEQKTKATDADEDNDEAACNANNEDD
QVKEEDQKKKEQSASNDKQPNGKKRSDKTVTDHNNKKPKKTVK
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccagaggttgaagcggcgaggaaagcaatagaggagaactgcttaggc
aagaagatcaagaaagctatcatagccagtgatgctaaagtcattgacggagtctctccc
tctgatttcgaagctgctcttgttggcaaaaccctaatttctgctcatcgtaagggcaaa
aacctgtggctccagctcgattctcccccttttccttcgtttcagtttgggatggctggt
gctatatatattaaaggagttgctgttaccaaatataaaaggtctgctgtgaacgacact
gatgagtggccatccaaatattcaaagctatttgttgaactagatgatggtctggagctg
tctttcactgataagaggcgatttgctaaagttcgcttgctcaacaatcctgtgtctgtg
cctccaatatctgagcttggccctgatgcactattgcagccaatggcagttgatgagttt
tataaatcattgtgcaagaagaaaatgcctatcaaggctctcttacttgatcagagtttt
atttctggtattggaaactggattgcagatgaagtgctataccaagccagaattcatcca
cagcaaagtgcttccagctttaccaaagaaagttgtgcaacattactcaagtgcatcaag
gaggtaattgaaaaagcaatagaagttgaggcagatagtagtcaattccccaatagttgg
attttccattctcgagaaaagaagcctgggaaggcttttattgacgggaaaaaaattgat
tttatcacttccggtggtaggacaacagcttatgtaccagagttgcaaaagctgagcgga
aaccaaatttcaaagagaagaaacagtgaggataataatgatgataatggagttgaaggt
gaggatgctgccagtaatgctgcaagcttggaagatggagctgccaagaaggcaaaacca
aagagagaattgaagcctagaggccgtggtaagaaacctccaccagaacagaagactaag
gcaactgatgctgatgaagataacgatgaagctgcttgtaatgctaataatgaggatgat
caggtaaaagaagaggatcaaaagaagaaagaacagagtgcgagcaatgataaacagccg
aacgggaagaagagatccgacaaaacagtaactgatcacaacaataagaagccaaagaaa
acagtgaagtag
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