Ricinus communis (castor bean): 8283867
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Entry
8283867 CDS
T01087
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
rcu
Ricinus communis (castor bean)
Pathway
rcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8283867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rcu03019
]
8283867
Messenger RNA biogenesis [BR:
rcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8283867
mRNA degradation factors
5'-3' decay
Decapping complex
8283867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_Vps41
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
8283867
NCBI-ProteinID:
XP_002525226
UniProt:
B9SGV7
LinkDB
All DBs
Position
10:complement(14128047..14138524)
Genome browser
AA seq
1440 aa
AA seq
DB search
MASAGNPPNQGGGGGGGGFDVNKLLKPSTSTIINNMNMNMNMMIQPSLQPPQPQQQPPPS
NSNPLTTSPSFPLPATVPSPPYITPSSSYPPPTGPYHHPHYLSPYPPPPPPLQQQPQQLH
YHPHQHPSHFLSNIHHHQQHNRPQPPPPISSNSNPVGVLMDILTNQNQQPQPQPQPPPSP
NLIIPSAPPPVTLASPTHQLQHSSSSPIRMLSTKLPKGRHLIGDHLLYDIDVRLPGEVQP
QLEVTPITKYVSDPGLLLGRQIAVNRNYICYGLKPGAIRILNINTALRSLLRGHYQKVTD
MAFFAEDVHLLASTCIDGRVFIRKINEGPDEEEKPQIFERIVLALQIIAEGESVHPRVCW
HPHKQEILIVAIRNRILKIDTIKVGKAEGFSAEKPLNCPIDKLIDGVQLAGKHDGEVTEL
SMCQWMTTRLASASADGTVKIWEDRKAVPLAILRPHDGNPVNSVAFLTAPDRPDHIVLIT
GGPLNQEVKIWASASEEGWLLPSDAESWQCRQTLTLNSSAESSVEDAFFNQVVALPRAGL
FLLANAKKNAIYAIHIEYGSYPAATRMDYIAEFTVTMPILSLTGTSDSLPSGERIVQVYC
VQTQAIQQYALDLSQCLPPPLENMELEKMETSVSCAFDAASSDGPAVLEPSHGNKTTEVS
LSKGTNTPSMISSSSENASAPTASHPESLASSEVTSLPDNVTSAIDTKVSALPSHSSTEI
TNNVSPPLPLSPQLSRKLSGFQGPQSSIEPSVQLNEHGADQRVQDYLVEHIMDSTKEIMT
DTPSSGDSLRKSEKNMAQTDISVVPEPLVLFKHPTHLVTPSEILSRAASSENSHIIQGIN
VGEAKVQDVIVNNDNESIEVEVKVVGETGSNQSNNFDMPRESHITIPDKKEKSFYSQASD
LSIQMVRDCCMEAYNSVGMQQVGEGSVAEVPDRPLNASADEEQDMRKNLNAKVGESEIAT
VVPQSAAPSTKGKKQKGKASQLSGLSSPSPSPFNSTDSSNEPGCSSGVQSSDAALFQLSA
MQDMLDQLLSMQKEMQKQINMMVSVPVTKEGKRLEASLGRSIEKVVKANTDALWARLQEE
NTKHEKLERDRTQQLTNLISNCVNKDLPSSVEKTLKKEIAAVGPAVARAVTPALEKSISL
AITESFQKGVGEKAVSQLEKSVSSKLEGTVARQIQSQFQTSGKQALQDALRSSLEAAIIP
AFEMSCKAMFDQIDATFQKGLINHLNSTQQQFDSANSHLAITLRDAINSASSITRTLSGE
LAEGQRKLLALAAAGANSKVGNSSLSNGPLVGLHEMAEAPLDPTKELSRMLSEHKFEEAF
TAALQRSDVSIVSWLCGQVNLQGILSMVPLPLSQGVLLALMQQLACDINKETPRKLAWMT
EVAVAINPADPMIAMHVRPILDQVYQILRHQRNLATISASEAASIRLLMHVINSVIMSCK
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagctggtaatcctccaaatcaaggaggaggaggtggtggtggtggttttgat
gtcaataaactgttgaagccgtctacaagcactattatcaataatatgaatatgaatatg
aatatgatgattcaaccatcattacagccgccgcaaccccaacaacaacctcctccatca
aattcaaaccctctcacaacctcaccttcttttcctctgcctgctactgttccttcacct
ccttacatcactccttcctcctcttatcctcctcctactggaccttatcatcatcctcac
tacctctctccttatccacctcctcctcctcctcttcaacaacaaccgcaacaacttcac
tatcacccccaccagcatcccagtcacttcctttctaacattcaccatcaccagcagcat
aatagacctcagccgcctccccccatctcttctaattccaatccagttggtgttttaatg
gacatcctcaccaatcagaatcagcagcctcaacctcaaccacagcctcctccgtccccc
aatctcatcatcccttccgctcctcctcctgtcactttggcctctcctactcatcagctt
cagcactcgtcctcttctcccatcaggatgctcagcaccaagctccccaagggccgccat
ttgattggcgaccatcttctctacgatattgatgtccgattgccaggcgaggtccaaccc
caactcgaagtcactcccatcaccaagtatgtctctgatcctggtcttcttctcgggcgt
cagattgctgtcaatcgcaattacatttgctatggtctcaagcctggcgccatccgcatc
cttaatatcaatactgccttgagatccttgctccgcggccattaccaaaaagtaacagat
atggcattctttgctgaggatgttcaccttcttgccagcacatgtattgatggacgtgtc
ttcatacgcaagattaatgaggggccagatgaggaagagaagcctcaaatatttgaaagg
atcgttcttgccctgcagattatagcagagggagaatctgtccacccacgagtgtgttgg
catcctcacaaacaagaaattttgatcgttgcaatcagaaatcgtatcctaaaaatagat
acaattaaagttggaaaagctgaagggttttctgcagagaagcctcttaattgtcccatt
gataagctgattgatggggtccagcttgctggtaagcacgatggtgaagttactgagttg
tcaatgtgtcaatggatgaccacccgtttggcttcagcttcagctgatggcacggtcaag
atttgggaagatcgtaaggcagtgccacttgctattttgagacctcatgatggtaaccct
gtaaattctgtggcgttcttgactgcccctgaccgccctgatcatattgttcttatcact
gggggcccactaaatcaagaagtaaagatatgggcctctgccagcgaggagggctggctg
ttgcccagtgatgctgaatcatggcagtgtcgtcagactttgaccttaaatagttccgct
gagtctagtgttgaggatgcattcttcaatcaagttgtagcactgcctcgtgctggtctg
tttttgctggcaaatgccaagaagaatgcaatatatgcaatacacatagaatatgggtct
tatccagctgctacccgcatggattacatagctgagtttacagttacaatgcctattttg
agtcttactggaactagtgatagcttaccaagtggagaacgtattgttcaggtttactgt
gtccaaacgcaagctattcagcagtatgcattggatttgtcgcagtgcctaccaccacct
ctggagaacatggagttggagaaaatggaaaccagtgtttcctgtgcttttgatgctgct
agctctgatggtcctgctgtactggaaccatctcatggaaataaaacaactgaggtttcc
ctgagtaaagggacaaacacaccttctatgatttcaagcagttctgaaaatgcttctgct
cccacagcaagccatcctgaaagcttggcttcttctgaggtcactagcttaccagataat
gttacctcagctatagatactaaagttagtgctttaccatcacatagtagtactgaaatt
accaacaatgtgtctcctccacttcctttgagtccacagttatcacgaaagttgtcaggt
ttccaaggtccacaaagcagcattgagcctagcgtgcaactcaatgaacatggtgctgat
cagcgcgttcaagattatttggtcgaacacataatggacagtacgaaagaaatcatgact
gatactccttcctctggtgacagtttgaggaagagtgagaaaaacatggcacaaactgac
atctcagtggttcccgaacctcttgtgctgtttaaacatccaacccatcttgtaacccca
tctgagatactgtccagggctgcctcatctgagaattcccatattattcagggaataaat
gtgggagaggctaaggttcaggatgtaattgtcaacaatgataacgaaagtattgaggta
gaggttaaagttgttggagaaacaggaagcaaccaaagtaacaattttgacatgcctaga
gaatcccatatcaccatcccagataaaaaggaaaaatccttctactctcaggcctcagat
ctcagcattcagatggtcagagattgttgtatggaagcttataatagtgtgggaatgcag
caggttggtgaaggtagtgtcgccgaggtgccagataggcctcttaatgccagtgcagat
gaagaacaagacatgagaaaaaacttgaatgcaaaggttggtgaatcagaaattgccact
gtagtcccacagtccgcagccccatccacaaagggaaaaaaacagaaagggaaagcttct
cagctgtctggtctgtcttccccttcccctagtcctttcaactccacagattcatccaat
gaaccaggttgtagttctggtgtccaatctagtgatgctgctttatttcaattatcagcc
atgcaggatatgcttgatcagttactgagcatgcagaaagaaatgcagaagcagataaat
atgatggtatctgttccagttaccaaagaaggtaaaaggttggaggcatccttgggtcgg
agtattgagaaagtcgtcaaggctaatactgatgctttatgggctcgtctccaagaagaa
aacacaaagcatgagaaattagagcgagatcgcacacagcagttaacaaatttgatttca
aactgtgtaaataaggatttgccgagctccgtagagaaaactttgaagaaggagatagct
gctgttggacctgctgtagctcgtgcagttactcctgccctggagaaaagcatatcatta
gctattacagagtcattccagaaaggggtgggggagaaggcagttagtcaactagaaaag
tcagttagttcaaaacttgaaggcacagtggccaggcaaatccaatcacaatttcaaact
tctggcaagcaagctcttcaggatgcactaagatctagtctggaagctgctatcattcct
gcatttgaaatgtcatgcaaagctatgtttgatcaaattgatgccacatttcaaaaaggg
ctaattaatcatctaaattccactcagcagcagttcgactctgccaattctcacttggcc
attactcttagggatgctatcaattcagcttcatcaattactcggaccctaagtggagaa
ttagctgagggccaacgtaagcttttagctcttgcagctgcaggtgcaaactccaaagtg
ggaaattcctctttgagtaatggaccgttggttggcttacatgagatggctgaggcacct
ctggatccaacaaaagaattatccagaatgttatctgaacacaaatttgaggaagcattc
acagcagcgctgcaaagaagtgatgtctcaatagtttcctggttatgtggtcaggtcaat
ctgcaagggattttgtccatggtaccactacctttaagtcaaggagttctgctcgccctt
atgcaacaattggcttgcgatatcaataaggaaacacctaggaagctggcatggatgaca
gaggtggctgttgctataaaccctgcagatccgatgattgcaatgcacgtgagaccaata
cttgatcaggtgtatcagatattgagacatcagaggaatctggcaactatatctgcttct
gaagctgccagtatacgacttcttatgcatgtcataaactctgtgataatgagctgtaaa
tga
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